HHsearch results for GI: 254780151 and protein with PDBid: 3k32_A
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=6.8e-24 Score=189.97 Aligned_cols=197 Identities=19% Similarity=0.200 Sum_probs=135.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf 86338899996098579999999988698499999870478766555577881899999999999809958981707886
Q gi|254780151|r 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERF 96 (408)
Q Consensus 17 ~~k~~kV~va~SGGVDSsvaa~lL~~~G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f 96 (408)
..|.|||+|++|||+||+++|++|++.|++|+++|+..... ++.+.|+++|++|||||+++++.++|
T Consensus 3 ~~k~~kv~V~~SGG~DS~~la~ll~~~g~~v~~v~~~~~~~-------------~~~~~a~~~a~~lgi~~~~~~~~~~~ 69 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVI-------------PSYKLAEETAKILGFKHKVITLDRKI 69 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHHHTTEEEEEEEEECSSS-------------CTTHHHHHHHHHHTCEEEEEECCTHH
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 55337089995587899999999997199769999879951-------------47899999999969971898578999
Q ss_pred HHHCCCCCHHHHHCCCCCCCEECCCCEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEE
Q ss_conf 63224411267870886120000154110588888740168764522531102541267877316885315787873189
Q gi|254780151|r 97 RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176 (408)
Q Consensus 97 ~~~V~~~~~~~y~~G~TPNPc~~CN~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSYf 176 (408)
.+.+++.+ .++.+|+||+. .+++.++...| .|+++|||||++.-.. ..- ...+.++.
T Consensus 70 ~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~a--~~~~~i~tGh~~dD~~----e~~-~~~~~~~~--------- 126 (203)
T 3k32_A 70 VEKAADMI----IEHKYPGPAIQ---YVHKTVLEILA--DEYSILADGTRRDDRV----PKL-SYSEIQSL--------- 126 (203)
T ss_dssp HHHHHHHH----HHHSSSHHHHH---HHHHHHHHHHT--TTCSEEECCCCTTCCS----SCC-CHHHHHHH---------
T ss_pred HHHHHHHH----HHCCCHHHHHH---HHHHHHHHHHH--CCCCEEEECCCCHHHH----CCC-HHHHHCCC---------
T ss_conf 98899999----84698249999---99999999996--6999999728807775----412-08771452---------
Q ss_pred EEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCHHHHHHCCCCCC-CCCCEE--CCCCCEE
Q ss_conf 8630202210033425689978989999741254355111023011127751034553076643-467110--3774322
Q gi|254780151|r 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIV--HLNGQIL 253 (408)
Q Consensus 177 L~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~~a~K~eSqgICFi~~~~~~~Fl~~~~~~~~-~~G~iv--d~~G~vi 253 (408)
.+......++||+.++|.||+++|+++ +.+..++++. ++..+|+..++.++.... .+-.+. ...+.++
T Consensus 127 ----~~~~~~~~~rPL~~~~k~ei~~~a~~~-~~~~~~~s~~----~~~~~y~~~ir~~l~~~~~~~~~~fp~h~~s~v~ 197 (203)
T 3k32_A 127 ----EMRKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGT----KLSSDYEAEIRHILKERGESPEKYFPEHKQTRVV 197 (203)
T ss_dssp ----HHHHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC----------CTHHHHHHHHHHHTCCGGGTSCC-CEEEEE
T ss_pred ----CHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCC----CCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEEE
T ss_conf ----022100002533598999999999970-8856688445----7640078999999997078976609765426675
Q ss_pred EEECC
Q ss_conf 33578
Q gi|254780151|r 254 GRHNG 258 (408)
Q Consensus 254 G~H~G 258 (408)
|.++.
T Consensus 198 ~~~~~ 202 (203)
T 3k32_A 198 GLKKE 202 (203)
T ss_dssp EESSC
T ss_pred EEECC
T ss_conf 44537