HHsearch results for GI: 254780151 and protein with PDBid: 3p52_A
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni}
Probab=99.75 E-value=1.3e-18 Score=152.15 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=116.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHH
Q ss_conf 3388999960985799999999886-984999998704787665555778818999999999998099589817078866
Q gi|254780151|r 19 KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFR 97 (408)
Q Consensus 19 k~~kV~va~SGGVDSsvaa~lL~~~-G~~V~g~~m~~~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI~~~~~d~~~~f~ 97 (408)
+.++|+|||||||||||+|+|++++ |.+|.|++|... -.++++.++|+++|+.|||+++++++.+.+.
T Consensus 25 g~~~vvlglSGGVDSsv~a~La~~al~~~v~~v~~~~~-----------~~~~~~~~~a~~la~~lgi~~~~~~~~~~~~ 93 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQ-----------ISNKANLEDALRLCADLNLEYKIIEIQSILD 93 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSC-----------CSSCHHHHHHHHHHHHHTCEEEECCCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------CCCHHHHHHHHHHHHHHCCCCCEEHHHHHHH
T ss_conf 99829997889889999999999844871799857841-----------1000689999999998177600000146888
Q ss_pred HHCCCCCHHHHHCCCCCCCEECCC--CEEEHHHHHHHHCCCCCCEECCCCCCCEEEECCCCCCCEEEEEECCCCCCCCEE
Q ss_conf 322441126787088612000015--411058888874016876452253110254126787731688531578787318
Q gi|254780151|r 98 NAVIVPFASSYAAGETPLPCVDCN--RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSY 175 (408)
Q Consensus 98 ~~V~~~~~~~y~~G~TPNPc~~CN--~~iKF~~l~~~a~~~g~~~iATGHYar~~~~~~~~~~~~~~L~r~~D~~KDQSY 175 (408)
..+...+. .++-..|| .++++..|+..|...|...+.||+.... ..| + ...
T Consensus 94 ~~~~~~~~--------~~~~~~~n~~ar~r~~~l~~~a~~~~~~v~~t~nkse~--~~G------~-~tk---------- 146 (249)
T 3p52_A 94 AFIKQSEN--------TTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKSEL--LLG------Y-GTI---------- 146 (249)
T ss_dssp HHHTTCSC--------CCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHH--HHT------C-SCT----------
T ss_pred HHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHH--HCC------C-HHH----------
T ss_conf 87510010--------00467889999887899987663528557678855545--257------3-223----------
Q ss_pred EEEEECCHHHCEEECCCCCCCHHHHHHHHHHCCCC--CCCHHHCCCEE
Q ss_conf 98630202210033425689978989999741254--35511102301
Q gi|254780151|r 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD--IADKSDSQDIC 221 (408)
Q Consensus 176 fL~~l~~~~L~~~~FPlg~~~K~eVR~~A~~~gl~--~a~K~eSqgIC 221 (408)
.......+.||++++|+|||++|+.+|+| +.+|+-|-|+.
T Consensus 147 ------~gd~~~~~~Pl~~L~K~eVr~La~~lg~p~~ii~k~psa~L~ 188 (249)
T 3p52_A 147 ------YGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLW 188 (249)
T ss_dssp ------TTTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC-------
T ss_pred ------HHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCC
T ss_conf ------531565200157978999999999969819870799996767