RPSBLAST alignment for GI: 254780151 and conserved domain: TIGR00420

>gnl|CDD|161871 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. Length = 352
 Score =  313 bits (804), Expect = 5e-86
 Identities = 135/368 (36%), Positives = 206/368 (55%), Gaps = 21/368 (5%)

Query: 21  MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
            +V+V +SGGVDSSV A LLK+ GY+V+GV ++ +     +   G C + +D+ DA+ +C
Sbjct: 1   KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHG-CTSAEDLRDAQAIC 59

Query: 81  DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
           + + +     ++++ + N V  PF   Y  G TP P + CN+ +KF   L    + LG D
Sbjct: 60  EKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGND 119

Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
            +ATGHY R       +GK    + R +D  +DQSYFL+  + +QL  L FPLG++ K  
Sbjct: 120 KIATGHYARIA---EIEGKSL--LLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPE 174

Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNG 258
           VR +A+  GL  A+K DSQ ICF+ + K+ D +K+        G I+ ++GQ ++G H+G
Sbjct: 175 VRQIAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLP--VKPGVIITVDGQSVIGEHDG 232

Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLF 316
           +  YTIGQR+GLG+    EP FVV  D  ++ +IV   +  L    +  ++ +WL D   
Sbjct: 233 LWFYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVSHGKPDLASRGLLAQQFHWLDDEPN 292

Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEA 375
              +    +C VKIR  Q PV   ++  DD +  V F++ + GV  GQ+ V Y  D    
Sbjct: 293 PFEM----RCTVKIRYRQVPVQCKLKLLDDNLIEVIFDEPQAGVTPGQSAVLYKGD---- 344

Query: 376 RVLGGGII 383
             LGGGII
Sbjct: 345 ICLGGGII 352