RPSBLAST alignment for GI: 254780151 and conserved domain: TIGR00420
>gnl|CDD|161871 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. Length = 352
Score = 313 bits (804), Expect = 5e-86
Identities = 135/368 (36%), Positives = 206/368 (55%), Gaps = 21/368 (5%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
+V+V +SGGVDSSV A LLK+ GY+V+GV ++ + + G C + +D+ DA+ +C
Sbjct: 1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHG-CTSAEDLRDAQAIC 59
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139
+ + + ++++ + N V PF Y G TP P + CN+ +KF L + LG D
Sbjct: 60 EKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGND 119
Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
+ATGHY R +GK + R +D +DQSYFL+ + +QL L FPLG++ K
Sbjct: 120 KIATGHYARIA---EIEGKSL--LLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPE 174
Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNG 258
VR +A+ GL A+K DSQ ICF+ + K+ D +K+ G I+ ++GQ ++G H+G
Sbjct: 175 VRQIAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLP--VKPGVIITVDGQSVIGEHDG 232
Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLF 316
+ YTIGQR+GLG+ EP FVV D ++ +IV + L + ++ +WL D
Sbjct: 233 LWFYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVSHGKPDLASRGLLAQQFHWLDDEPN 292
Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEA 375
+ +C VKIR Q PV ++ DD + V F++ + GV GQ+ V Y D
Sbjct: 293 PFEM----RCTVKIRYRQVPVQCKLKLLDDNLIEVIFDEPQAGVTPGQSAVLYKGD---- 344
Query: 376 RVLGGGII 383
LGGGII
Sbjct: 345 ICLGGGII 352