RPSBLAST alignment of GI: 254780151 and protein with PDBid: 2der
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380
Score = 292 bits (749), Expect = 8e-80
Identities = 123/375 (32%), Positives = 195/375 (52%), Gaps = 28/375 (7%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
+V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA+
Sbjct: 16 TAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE---EYCTAAADLADAQA 72
Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137
VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L LG
Sbjct: 73 VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 132
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
AD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K
Sbjct: 133 ADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEK 187
Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H
Sbjct: 188 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYL--PAQPGKIITVDGDEIGEHQ 245
Query: 258 GIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREIN 309
G++ +T+GQR+GLG+ EP +VV D ++ ++V L + ++++
Sbjct: 246 GLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLH 305
Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
W+ F +C VK R Q +P V+ DD + V F++ V GQ+ VFY
Sbjct: 306 WVDREPFT----GTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY 361
Query: 369 TSDSNEARVLGGGII 383
+ LGGGII
Sbjct: 362 NGE----VCLGGGII 372