RPSBLAST alignment of GI: 254780151 and protein with PDBid: 2der

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380
 Score =  292 bits (749), Expect = 8e-80
 Identities = 123/375 (32%), Positives = 195/375 (52%), Gaps = 28/375 (7%)

Query: 19  KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
              +V+V MSGGVDSSV A LL++ GY V G+ ++ +           C A  D+ DA+ 
Sbjct: 16  TAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE---EYCTAAADLADAQA 72

Query: 79  VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137
           VCD + +  +  ++   + + V   F + Y AG TP P + CN+ +KF   L      LG
Sbjct: 73  VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 132

Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
           AD +ATGHY+R       D   +  + R +D  +DQSYFL+  + +Q+    FP+G+++K
Sbjct: 133 ADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEK 187

Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
             VR +A ++GL  A K DS  ICF+ + K+ + + R     A  G I+ ++G  +G H 
Sbjct: 188 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYL--PAQPGKIITVDGDEIGEHQ 245

Query: 258 GIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREIN 309
           G++ +T+GQR+GLG+        EP +VV  D  ++ ++V        L    +  ++++
Sbjct: 246 GLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLH 305

Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
           W+    F        +C VK R  Q  +P  V+  DD  + V F++    V  GQ+ VFY
Sbjct: 306 WVDREPFT----GTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY 361

Query: 369 TSDSNEARVLGGGII 383
             +      LGGGII
Sbjct: 362 NGE----VCLGGGII 372