BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase
MnmA [Candidatus Liberibacter asiaticus str. psy62]
(408 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA
Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60
Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC
Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT
Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180
Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA
Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240
Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV
Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300
Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA
Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360
Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM
Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
RV+ A+SGGVDS+V A L+ Y+ IG+ L
Sbjct: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 27.7 bits (60), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDA 76
+V++ +SGG+DS++ AA+ L ++ I + + Y S ++ + +C YD
Sbjct: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYK-YTSPQSLEDAAACAKALGCKYDV 352
Query: 77 RRVCDTIN 84
+ D +N
Sbjct: 353 LPIHDLVN 360
>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 26.9 bits (58), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 230 DVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289
D+V + IAL+ ++L + LGR G + R G+ ++ G P ++ L +NSS
Sbjct: 234 DIVSKSEDPIALKA--INLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSF 291
Query: 290 VIVGPRESLE---VHRIYLREI 308
RES E H+ +R+I
Sbjct: 292 -----RESFENKSPHKELMRQI 308
>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 404
Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVY--DA 76
+VV+A SGG+D+S++ L+ G +VI L K + K ++VY D
Sbjct: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYVKDL 66
Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
RR V +VF FR + + Y G R + L+ + +
Sbjct: 67 RREF----VRDFVFPM---FRANAL--YEGYYLLGTA------IARPLIAKYLVDIANET 111
Query: 137 GADVLATG 144
GAD +A G
Sbjct: 112 GADAIAHG 119
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
TQQ+L + L + +K R LAREM L
Sbjct: 226 NTQQELTQYLYFLEESEKRDHRKLAREMDL 255
>gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 172
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394
S+ V + + V +++D+NE RVLGG + G D++++
Sbjct: 83 SDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQ 122
>gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 382 IISGSKRSDAVEESLLSVIGDEFP 405
I+ ++R +A +E++LSV D FP
Sbjct: 75 ILQATERINAAKENILSVRADLFP 98
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 23.5 bits (49), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALL 40
NS L K PKD +VA+S VDS + L
Sbjct: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVAL 46
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,228
Number of Sequences: 1233
Number of extensions: 10619
Number of successful extensions: 34
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 408
length of database: 328,796
effective HSP length: 76
effective length of query: 332
effective length of database: 235,088
effective search space: 78049216
effective search space used: 78049216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)