Query gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 82
No_of_seqs 110 out of 4711
Neff 6.8
Searched_HMMs 39220
Date Sun May 22 21:11:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780152.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13581 D-3-phosphoglycerate 99.9 1.3E-26 3.2E-31 168.2 6.8 81 1-81 56-136 (524)
2 PRK11790 D-3-phosphoglycerate 99.9 4E-26 1E-30 165.4 7.1 81 1-81 69-149 (409)
3 PRK07574 formate dehydrogenase 99.9 1.2E-25 2.9E-30 162.9 6.1 81 1-81 108-190 (385)
4 pfam00389 2-Hacid_dh D-isomer 99.9 4.2E-25 1.1E-29 159.8 6.5 81 1-81 55-135 (313)
5 PRK13243 glyoxylate reductase; 99.9 7.7E-25 2E-29 158.3 7.0 81 1-81 61-148 (333)
6 PRK06932 glycerate dehydrogena 99.9 1.4E-23 3.5E-28 151.4 6.6 74 1-74 59-132 (314)
7 COG1052 LdhA Lactate dehydroge 99.9 1.7E-23 4.4E-28 150.9 7.0 81 1-81 60-144 (324)
8 PRK08605 D-lactate dehydrogena 99.9 1.4E-23 3.6E-28 151.4 6.0 82 1-82 61-145 (332)
9 PRK06487 glycerate dehydrogena 99.9 2.5E-23 6.5E-28 150.0 6.3 75 1-75 60-134 (317)
10 PRK08410 2-hydroxyacid dehydro 99.9 2.6E-23 6.5E-28 149.9 6.1 75 1-75 57-131 (311)
11 PRK12480 D-lactate dehydrogena 99.9 5.4E-23 1.4E-27 148.1 6.0 81 1-81 61-144 (330)
12 COG0111 SerA Phosphoglycerate 99.9 7.1E-22 1.8E-26 142.0 6.4 81 1-81 60-140 (324)
13 KOG0068 consensus 99.8 8.4E-22 2.2E-26 141.6 3.9 80 2-81 64-144 (406)
14 PRK06436 glycerate dehydrogena 99.8 8E-21 2E-25 136.2 6.7 73 2-75 44-116 (303)
15 KOG0069 consensus 99.7 1.6E-18 4E-23 123.5 5.6 69 3-71 80-148 (336)
16 PRK00257 erythronate-4-phospha 99.6 5.9E-16 1.5E-20 109.3 4.3 57 1-58 53-109 (379)
17 TIGR01327 PGDH D-3-phosphoglyc 99.5 4.7E-15 1.2E-19 104.3 4.4 81 1-81 57-137 (535)
18 KOG0067 consensus 98.6 2.2E-08 5.6E-13 67.4 2.9 78 2-79 90-167 (435)
19 pfam02826 2-Hacid_dh_C D-isome 96.7 0.0014 3.6E-08 40.9 2.9 33 49-81 1-34 (176)
20 TIGR01011 rpsB_bact ribosomal 84.9 0.64 1.6E-05 26.2 2.2 44 2-47 154-198 (227)
21 TIGR02853 spore_dpaA dipicolin 49.5 18 0.00046 18.2 3.0 31 25-55 109-145 (288)
22 PRK08306 dipicolinate synthase 48.2 26 0.00067 17.3 4.3 51 2-53 228-278 (296)
23 PRK08782 consensus 44.5 27 0.00069 17.3 3.3 65 4-69 154-219 (219)
24 COG0052 RpsB Ribosomal protein 35.0 20 0.00052 17.9 1.4 52 3-56 154-216 (252)
25 PRK05299 rpsB 30S ribosomal pr 33.7 32 0.00081 16.9 2.2 36 4-41 156-191 (255)
26 PHA00371 mat maturation protei 31.3 33 0.00084 16.8 2.0 32 42-73 145-176 (418)
27 PRK12311 rpsB 30S ribosomal pr 30.5 29 0.00075 17.0 1.6 38 3-42 157-194 (332)
28 PRK08418 chlorohydrolase; Prov 29.8 31 0.00078 17.0 1.6 33 8-40 254-286 (407)
29 pfam03863 Phage_mat-A Phage ma 25.8 52 0.0013 15.7 2.2 33 41-73 144-176 (399)
30 cd01312 Met_dep_hydrolase_D Me 22.5 53 0.0013 15.7 1.7 32 9-40 232-263 (381)
31 TIGR01556 rhamnosyltran rhamno 22.3 43 0.0011 16.1 1.2 42 18-59 182-227 (291)
32 PRK08393 N-ethylammeline chlor 21.8 46 0.0012 16.0 1.3 33 9-41 238-270 (419)
33 PRK07203 putative chlorohydrol 21.3 60 0.0015 15.4 1.8 32 9-40 256-287 (442)
No 1
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.93 E-value=1.3e-26 Score=168.22 Aligned_cols=81 Identities=57% Similarity=0.967 Sum_probs=79.1
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
+|+++|+||+|+++|+|+||||+++|+++||.|+|+|++|+.|||||++++||+++|+++.+++.+|+|+|+|..|.|.|
T Consensus 56 ~l~~a~~LK~I~r~GvG~DnID~~aa~~~GI~V~ntP~~n~~svAE~~i~l~l~l~R~i~~~~~~~~~g~W~r~~~~G~e 135 (524)
T PRK13581 56 VIEAAKNLKVIGRAGVGVDNVDIPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQADASLKAGKWERKKFMGVE 135 (524)
T ss_pred HHHCCCCCEEEEECCCCCCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99269997699988816751169999878998994899772889999999999984897799999983996755656621
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
|
T Consensus 136 L 136 (524)
T PRK13581 136 L 136 (524)
T ss_pred C
T ss_conf 3
No 2
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.93 E-value=4e-26 Score=165.42 Aligned_cols=81 Identities=36% Similarity=0.578 Sum_probs=78.0
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
+|+++|+||+|+++|+|+||||+++|+++||.|+|+|++|+.|||||++++||+++|+++..++.+|+|+|.+..+.|+|
T Consensus 69 vi~~a~~Lk~I~r~GvG~dnIDl~aa~~~GI~V~NtPg~Na~aVAEl~i~l~L~l~R~i~~~~~~~~~G~W~k~~~~~~E 148 (409)
T PRK11790 69 VLEAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVLGEIILLLRGIPEKNAKAHRGGWNKSAAGSFE 148 (409)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 99439997199983215774089999869948996999772889999999999998647999999982998756777556
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
|
T Consensus 149 l 149 (409)
T PRK11790 149 V 149 (409)
T ss_pred E
T ss_conf 3
No 3
>PRK07574 formate dehydrogenase; Provisional
Probab=99.92 E-value=1.2e-25 Score=162.91 Aligned_cols=81 Identities=31% Similarity=0.464 Sum_probs=74.7
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCC--EE
Q ss_conf 8023889859998165608833367412441364314324355289999999999727799999998599861121--40
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNF--MG 78 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~--~G 78 (82)
+|+++||||+|++.|+|+||||+++|++|||.|+|+|++|+.|||||++++||++.|++..+++.+++|.|++... .+
T Consensus 108 ~IekApnLKli~tAGVG~DnIDL~AA~erGI~V~nvpG~Ns~SVAEhtv~liLal~R~i~~~~~~v~~G~W~~a~~~~~~ 187 (385)
T PRK07574 108 RIAKAPNLKLAITAGIGSDHVDLQAASEHNITVAEVTGSNSISVAEHVVMMILALVRNYLPSHRQVVDGGWNIADCVSRS 187 (385)
T ss_pred HHHCCCCCEEEEEEEECCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCCCC
T ss_conf 99438867399994204724549989978999995999871999999999999997588889999984998512125664
Q ss_pred EEC
Q ss_conf 017
Q gi|254780152|r 79 VEA 81 (82)
Q Consensus 79 ~El 81 (82)
+||
T Consensus 188 ~EL 190 (385)
T PRK07574 188 YDL 190 (385)
T ss_pred EEC
T ss_conf 326
No 4
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=99.91 E-value=4.2e-25 Score=159.79 Aligned_cols=81 Identities=41% Similarity=0.653 Sum_probs=77.5
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
+|+++|+||+|+++|+||||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+|+|+|.+..+.|.|
T Consensus 55 ~l~~~~~LK~I~~~~~G~D~ID~~~a~~~gI~V~n~p~~~~~aVAE~~i~l~L~l~R~~~~~~~~~r~g~w~~~~~~~~~ 134 (313)
T pfam00389 55 VLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKGGPIGLE 134 (313)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99449998499988844553059999979999998998772899999999999971230788999980876655655533
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
+
T Consensus 135 l 135 (313)
T pfam00389 135 L 135 (313)
T ss_pred C
T ss_conf 6
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.91 E-value=7.7e-25 Score=158.34 Aligned_cols=81 Identities=32% Similarity=0.570 Sum_probs=75.4
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC-----
Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112-----
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN----- 75 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~----- 75 (82)
+|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.|||||++++||+++|++..+++.+|+|+|.+..
T Consensus 61 ~l~~ap~LK~I~~~gvG~D~ID~~~a~~~gI~V~ntpg~~~~sVAE~~~~liL~~~R~i~~~~~~~r~g~w~~~~~~~~p 140 (333)
T PRK13243 61 VFEAAPRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTEATADFAFALLLATARRVVEADKFVRSGEWKRRGVAWHP 140 (333)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99469998099885746433059999969978996899684799999999999998649999999984986645666676
Q ss_pred --CEEEEC
Q ss_conf --140017
Q gi|254780152|r 76 --FMGVEA 81 (82)
Q Consensus 76 --~~G~El 81 (82)
+.|+||
T Consensus 141 ~~~~g~eL 148 (333)
T PRK13243 141 MMFLGYDV 148 (333)
T ss_pred CCCCCCCC
T ss_conf 34456466
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.89 E-value=1.4e-23 Score=151.42 Aligned_cols=74 Identities=31% Similarity=0.439 Sum_probs=71.5
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82)
+|+++||||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.+.
T Consensus 59 vl~~ap~LK~I~~~g~G~D~ID~~aa~~~gI~V~n~pg~~~~~VAE~~i~liL~l~r~i~~~~~~~~~~~W~~~ 132 (314)
T PRK06932 59 TLQQLPKLKLIAITATGTNNVDLVAAKELGITVKNVTGYSSTTVPEHVLGLIFALKHSLMGWYRDQLSAKWAEC 132 (314)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99539998099889834564789999749979993898672789999999999999779999999983864324
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=150.86 Aligned_cols=81 Identities=33% Similarity=0.553 Sum_probs=75.3
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC----C
Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112----1
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN----F 76 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~----~ 76 (82)
+|+++|+||+|+..|+||||||+++|+++||.|+|+|++++++||||+++|||++.|++.+.++.+|+|+|.... +
T Consensus 60 ~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~ 139 (324)
T COG1052 60 VLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPL 139 (324)
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99748893699992436675049889878949995899884169999999999985244889999871763325665544
Q ss_pred EEEEC
Q ss_conf 40017
Q gi|254780152|r 77 MGVEA 81 (82)
Q Consensus 77 ~G~El 81 (82)
.|.++
T Consensus 140 ~~~~l 144 (324)
T COG1052 140 LGFDL 144 (324)
T ss_pred CCCCC
T ss_conf 44467
No 8
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.89 E-value=1.4e-23 Score=151.37 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=75.1
Q ss_pred CHHHCCCC--CEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC-CCCE
Q ss_conf 80238898--59998165608833367412441364314324355289999999999727799999998599861-1214
Q gi|254780152|r 1 MLSHAKKM--KVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEK-FNFM 77 (82)
Q Consensus 1 il~~~~~L--k~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~-~~~~ 77 (82)
+|+++|+| |+|+++|+||||||+++|+++||.|+|+|++++.+||||+++|||+++|++..+++.+|+|+|.. ..+.
T Consensus 61 vl~~~~~l~iK~I~r~gvG~DnIDl~~a~~~gI~V~n~P~~~~~aVAE~ai~liL~l~R~i~~~~~~~~~~~~~w~~~~~ 140 (332)
T PRK08605 61 IYKLLNELGIKQIAQRSAGFDTYDLELANKYNIIISNVPSYSPESIAEFTVTQAINLVRHFNLIQTKVREHDFRWEPPIL 140 (332)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99966636977999777217454699999799989959986848999999999999985659999999825876477657
Q ss_pred EEECC
Q ss_conf 00178
Q gi|254780152|r 78 GVEAG 82 (82)
Q Consensus 78 G~ElG 82 (82)
|.||+
T Consensus 141 g~~l~ 145 (332)
T PRK08605 141 SRSIK 145 (332)
T ss_pred CEECC
T ss_conf 54503
No 9
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.88 E-value=2.5e-23 Score=149.97 Aligned_cols=75 Identities=32% Similarity=0.523 Sum_probs=72.0
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82)
+|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|++..
T Consensus 60 ~l~~ap~LK~I~~~g~G~d~ID~~aa~~~gI~V~n~pg~~~~~VAE~~l~liL~l~R~~~~~~~~~~~g~W~~~~ 134 (317)
T PRK06487 60 ALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSS 134 (317)
T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 993499981998888363220699999789989978986837999999999999985458999999828433365
No 10
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.88 E-value=2.6e-23 Score=149.94 Aligned_cols=75 Identities=27% Similarity=0.399 Sum_probs=72.0
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82)
+|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|+|.+..
T Consensus 57 ~l~~a~~LK~I~~~g~G~D~ID~~aa~~~gI~V~n~p~~~~~aVAE~~l~~iL~l~r~i~~~~~~~~~g~w~~~~ 131 (311)
T PRK08410 57 VLSALPNLKLICITATGTNNVDLEYAKKRGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDNYVKSGEYSKSP 131 (311)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 993699984999888156142199999799689927997848899999999999985579999999716533465
No 11
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.88 E-value=5.4e-23 Score=148.14 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=74.0
Q ss_pred CHHHCCC--CCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC-CCCE
Q ss_conf 8023889--859998165608833367412441364314324355289999999999727799999998599861-1214
Q gi|254780152|r 1 MLSHAKK--MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEK-FNFM 77 (82)
Q Consensus 1 il~~~~~--Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~-~~~~ 77 (82)
+|+++++ ||+|++.|+||||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.++.|+|.. ..+.
T Consensus 61 vl~~l~~~~LK~I~~~gvG~D~IDl~aa~~~GI~V~n~P~~~~~aVAE~ai~liL~l~R~~~~~~~~~~~~~~~~~~~~~ 140 (330)
T PRK12480 61 VYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIM 140 (330)
T ss_pred HHHHHHHCCCEEEEECCEECCHHCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99965567975999877217521699999789999959986828999999999999984549999999827876456557
Q ss_pred EEEC
Q ss_conf 0017
Q gi|254780152|r 78 GVEA 81 (82)
Q Consensus 78 G~El 81 (82)
|.||
T Consensus 141 g~~l 144 (330)
T PRK12480 141 SKPV 144 (330)
T ss_pred CCCC
T ss_conf 7523
No 12
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.85 E-value=7.1e-22 Score=141.97 Aligned_cols=81 Identities=46% Similarity=0.819 Sum_probs=77.0
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
+|+.+|+||+|+++|+|+||||+++++++||.|+|+|++|+.+||||++++||+++|+++.+++.+|+|.|++..+.|.|
T Consensus 60 ~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~e 139 (324)
T COG0111 60 VLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTE 139 (324)
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98218886199990516554363553137437996798653769999999999996056477899872867523566510
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
|
T Consensus 140 l 140 (324)
T COG0111 140 L 140 (324)
T ss_pred C
T ss_conf 1
No 13
>KOG0068 consensus
Probab=99.84 E-value=8.4e-22 Score=141.56 Aligned_cols=80 Identities=51% Similarity=0.789 Sum_probs=76.7
Q ss_pred HH-HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 02-38898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 2 LS-HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 2 l~-~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
|+ ++.+||+|++.|+|+||||+++++++||.|.|+|.+|+.|+||+++++|++++|++.+++..+|+|+|.|..++|.|
T Consensus 64 l~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~e 143 (406)
T KOG0068 64 LEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWE 143 (406)
T ss_pred HHHHCCCEEEEEECCCCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCEEECCEEEEE
T ss_conf 98603874899851357565472557757838995898871779999999999975120310015435841101201467
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
|
T Consensus 144 l 144 (406)
T KOG0068 144 L 144 (406)
T ss_pred E
T ss_conf 7
No 14
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.83 E-value=8e-21 Score=136.15 Aligned_cols=73 Identities=27% Similarity=0.382 Sum_probs=66.5
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 02388985999816560883336741244136431432435528999999999972779999999859986112
Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82)
Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82)
+..+||||+|++.|+|+||||+++|++ ++.++++|+.++.+||||++++||+++|+++.+++.+|+|.|++..
T Consensus 44 ~~~aknLK~I~~~g~G~D~IDlea~~~-~iiv~~n~g~~s~aVAE~al~liLal~R~i~~~~~~~r~g~W~~~~ 116 (303)
T PRK06436 44 YVPGKKTKMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSP 116 (303)
T ss_pred CCCCCCCEEEEECCEECCHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
T ss_conf 776888559998976875235999976-9989989998862799999999999981868999999807555789
No 15
>KOG0069 consensus
Probab=99.75 E-value=1.6e-18 Score=123.50 Aligned_cols=69 Identities=33% Similarity=0.506 Sum_probs=67.1
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC
Q ss_conf 238898599981656088333674124413643143243552899999999997277999999985998
Q gi|254780152|r 3 SHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKW 71 (82)
Q Consensus 3 ~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W 71 (82)
..+|+||+|+++|+|+||||+++|++|||.|+|+|+.++++|||++++++|.+.|++..+++.+++|.|
T Consensus 80 a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w 148 (336)
T KOG0069 80 ALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW 148 (336)
T ss_pred HCCCCEEEEEEEECCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 318872699984106532138989865966860587421788999999999998510243444325776
No 16
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.60 E-value=5.9e-16 Score=109.26 Aligned_cols=57 Identities=32% Similarity=0.472 Sum_probs=52.5
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 8023889859998165608833367412441364314324355289999999999727
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQ 58 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~ 58 (82)
+|+ ..+||+|+++++|+||||+++|+++||.|+|+|++|+.||||+++++++.+.|.
T Consensus 53 LL~-~s~lKfIgtat~G~DhID~~~l~~~gI~v~naPG~Na~sVaEyvl~~ll~la~~ 109 (379)
T PRK00257 53 LLE-GSKVRFVGTCTIGTDHLDLDYFAEAGITWSNAPGCNARGVVDYVLGSLLTLAER 109 (379)
T ss_pred HHC-CCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 975-699269997456353146999986997899699877799999999999999985
No 17
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=99.54 E-value=4.7e-15 Score=104.31 Aligned_cols=81 Identities=49% Similarity=0.901 Sum_probs=78.5
Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001
Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82)
Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82)
+++.+++||.+++.|+|.||+|++++.++||.+.|+|+.++.+.+||++++++++.|+++.++..+++++|++..|.|.|
T Consensus 57 ~~~~~~~l~~~~~~g~g~d~~d~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~w~~~~~~g~~ 136 (535)
T TIGR01327 57 LLEAAPKLKVIGRAGVGVDNIDIEAATKKGILVVNAPGGNTISAAEHALALLLAAARNIPQADASLKEGEWDRKKFLGTE 136 (535)
T ss_pred HHHHHHHCEEEEECCCCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCH
T ss_conf 86201110121103554333440013116647984688651146889999999987316401234420332001101100
Q ss_pred C
Q ss_conf 7
Q gi|254780152|r 81 A 81 (82)
Q Consensus 81 l 81 (82)
+
T Consensus 137 ~ 137 (535)
T TIGR01327 137 L 137 (535)
T ss_pred H
T ss_conf 1
No 18
>KOG0067 consensus
Probab=98.61 E-value=2.2e-08 Score=67.44 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=70.6
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 023889859998165608833367412441364314324355289999999999727799999998599861121400
Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79 (82)
Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~ 79 (82)
+++.+-||++.+.|.|+||+|+.+|.+.+|.|||.|+..-+.+|.-++.+||.++|.-.-..+..++|.|.+.--.++
T Consensus 90 lEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~ 167 (435)
T KOG0067 90 LEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVR 167 (435)
T ss_pred HHHHHHHCEEEEECCCCCHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECHHHHH
T ss_conf 877522200565115665455444422003443265126888877789998755404415442211664552144543
No 19
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=96.66 E-value=0.0014 Score=40.91 Aligned_cols=33 Identities=36% Similarity=0.776 Sum_probs=28.1
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCC-CCCEEEEC
Q ss_conf 9999999727799999998599861-12140017
Q gi|254780152|r 49 ISLMLAIARQIPVANESTHKGKWEK-FNFMGVEA 81 (82)
Q Consensus 49 i~l~L~l~R~~~~~~~~~~~g~W~~-~~~~G~El 81 (82)
++|||++.|+++.+++.+++|+|.+ ..+.|+||
T Consensus 1 i~liL~~~R~i~~~~~~~~~g~W~~~~~~~g~~L 34 (176)
T pfam02826 1 LALLLALARRIPEADRQVRAGRWARPDALLGREL 34 (176)
T ss_pred CHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9689998768899999998699998788885557
No 20
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=84.94 E-value=0.64 Score=26.24 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC-HHHH
Q ss_conf 023889859998165608833367412441364314324355-2899
Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT-TAEH 47 (82)
Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~s-VAE~ 47 (82)
|+..|.|=+|.-+ .++||-+..|++.||||.-.-+-|++| +-+|
T Consensus 154 M~~lPd~l~viD~--~~E~IAv~EA~kLgIPvvA~vDTNCdPd~vD~ 198 (227)
T TIGR01011 154 MKKLPDLLFVIDP--RKEKIAVAEARKLGIPVVAIVDTNCDPDVVDY 198 (227)
T ss_pred HHCCCCEEEEECC--CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 5316970899748--21068999973379978987047888886650
No 21
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=49.47 E-value=18 Score=18.23 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=15.5
Q ss_pred HHHCCCCEEEE------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 74124413643------14324355289999999999
Q gi|254780152|r 25 VASRAGIVVMN------TPFGNSITTAEHAISLMLAI 55 (82)
Q Consensus 25 ~~~~~gI~v~n------~~~~~~~sVAE~~i~l~L~l 55 (82)
.|++.|+.+.. +.-||++|.||=|++|.+..
T Consensus 109 l~~~a~~~Li~l~erDdvAIYNSIPtaEGAimMA~e~ 145 (288)
T TIGR02853 109 LAAEAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH 145 (288)
T ss_pred HHHHCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf 9987196024100357533445875567899999724
No 22
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=48.25 E-value=26 Score=17.33 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 0238898599981656088333674124413643143243552899999999
Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLML 53 (82)
Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L 53 (82)
|+..|+=-+|.-.....--+|+++|+++||....+|+-+. -||-.+-+-+|
T Consensus 228 l~~~~~~avIIDLAS~PGG~Df~~A~~~Gika~lapgLPG-k~APkTag~Il 278 (296)
T PRK08306 228 LSKMPPHALIIDLASKPGGTDFEYAKKLGIKALLAPGLPG-KVAPKTAGQIL 278 (296)
T ss_pred HHCCCCCCEEEEECCCCCCCCHHHHHHHCCEEEECCCCCC-CCCHHHHHHHH
T ss_conf 9418999699994779997388999983985997289997-31715399999
No 23
>PRK08782 consensus
Probab=44.53 E-value=27 Score=17.25 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=47.2
Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 38898599981656088333674124413643143-2435528999999999972779999999859
Q gi|254780152|r 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPF-GNSITTAEHAISLMLAIARQIPVANESTHKG 69 (82)
Q Consensus 4 ~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~-~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g 69 (82)
-+|.++++.+-|+..||+. ++....++.+....- .+.+.+++--+.-+=..+|+....-+.+|+|
T Consensus 154 pfp~~~f~pTGGV~~~N~~-~yl~~~~v~~vgGS~l~~~~li~~~dw~~I~~~a~~~~~~v~~~r~g 219 (219)
T PRK08782 154 PLSELKLCPTGGISETNAA-EFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG 219 (219)
T ss_pred CCCCCEEEECCCCCHHHHH-HHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6999818767998987899-99807993999882538999986199999999999999999997577
No 24
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=20 Score=17.94 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC-----------CHHHHHHHHHHHHH
Q ss_conf 2388985999816560883336741244136431432435-----------52899999999997
Q gi|254780152|r 3 SHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI-----------TTAEHAISLMLAIA 56 (82)
Q Consensus 3 ~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~-----------sVAE~~i~l~L~l~ 56 (82)
...|.+-+|.- ...|++-+..|++.||+|.-.-+.|++ .=|=-++.|+..++
T Consensus 154 ~~~Pd~l~ViD--p~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~l 216 (252)
T COG0052 154 KGLPDVLFVID--PRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLL 216 (252)
T ss_pred CCCCCEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 67999899968--8176899999997599989984189997657655228870898999999999
No 25
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=33.71 E-value=32 Score=16.87 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=26.0
Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC
Q ss_conf 38898599981656088333674124413643143243
Q gi|254780152|r 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41 (82)
Q Consensus 4 ~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~ 41 (82)
..|.+ |.......|++-+..|.+.||++...-+.|+
T Consensus 156 ~lPd~--viv~d~~~e~~AV~EA~kl~IPvI~ivDTn~ 191 (255)
T PRK05299 156 GLPDA--LFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (255)
T ss_pred CCCCE--EEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 19987--9984785337999999975998887624899
No 26
>PHA00371 mat maturation protein
Probab=31.34 E-value=33 Score=16.77 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC
Q ss_conf 55289999999999727799999998599861
Q gi|254780152|r 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 (82)
Q Consensus 42 ~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~ 73 (82)
.+=+--|+.++..+.|.+.+..+++|+|+|++
T Consensus 145 ~~E~reTls~L~~~~~~lv~~yrAvrrGDlkr 176 (418)
T PHA00371 145 IAEGRETLKYLALQLIRLVRAYRAARRGDLKR 176 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 88889999999999999999999885166999
No 27
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=30.49 E-value=29 Score=17.05 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=27.2
Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC
Q ss_conf 2388985999816560883336741244136431432435
Q gi|254780152|r 3 SHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82)
Q Consensus 3 ~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82)
...|.+-+|. ....+++-+..|++.||+|.-.-+.|++
T Consensus 157 ~~lPDlvfVi--D~~kE~iAV~EA~kLgIPvIaIvDTN~d 194 (332)
T PRK12311 157 GGLPDLIFVI--DTNKEDIAIQEAQRLGIPVAAIVDTNCD 194 (332)
T ss_pred CCCCCEEEEE--CCCCCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 5599989996--8973389999999809798999738999
No 28
>PRK08418 chlorohydrolase; Provisional
Probab=29.83 E-value=31 Score=16.96 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCEEEECCCCC
Q ss_conf 859998165608833367412441364314324
Q gi|254780152|r 8 MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGN 40 (82)
Q Consensus 8 Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~ 40 (82)
.+.+..+++..+.=|++.++++|..|+++|.+|
T Consensus 254 ~~~i~aH~v~l~d~ei~lla~~g~~VahcP~SN 286 (407)
T PRK08418 254 LRTLFTHCVYASEEELEKIKSLGHSIIHCPFSN 286 (407)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 883999747789999999997199699987889
No 29
>pfam03863 Phage_mat-A Phage maturation protein.
Probab=25.76 E-value=52 Score=15.70 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC
Q ss_conf 355289999999999727799999998599861
Q gi|254780152|r 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 (82)
Q Consensus 41 ~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~ 73 (82)
..+=+--|+.++....|.+.+..+++|+|+|++
T Consensus 144 ~iaE~ReTls~l~l~~r~l~~~y~Avrrgdlrr 176 (399)
T pfam03863 144 LIAEARETLSYLALLLRRLVKAYRAVRRGDLRR 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 677779899999999999999998885054999
No 30
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.47 E-value=53 Score=15.65 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=23.7
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEEECCCCC
Q ss_conf 59998165608833367412441364314324
Q gi|254780152|r 9 KVVGRAGIGTDNVDLVVASRAGIVVMNTPFGN 40 (82)
Q Consensus 9 k~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~ 40 (82)
+.+..+++..+.=|++..+++|..|+.+|.+|
T Consensus 232 ~~~~aH~~~l~~~di~~la~~g~~v~~cP~Sn 263 (381)
T cd01312 232 RVSFVHCVYANLEEAEILASRGASIALCPRSN 263 (381)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 87999525899899999997698588776778
No 31
>TIGR01556 rhamnosyltran rhamnosyltransferase; InterPro: IPR006446 This subfamily is composed of sequences from the gamma proteobacteria that function as L-rhamnosyltransferases in the synthesis of their respective surface polysaccharides. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In Pseudomonas aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids . .
Probab=22.33 E-value=43 Score=16.12 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCCCCHHHH---HCCCCEEEECCCC-CCCCHHHHHHHHHHHHHHCH
Q ss_conf 088333674---1244136431432-43552899999999997277
Q gi|254780152|r 18 TDNVDLVVA---SRAGIVVMNTPFG-NSITTAEHAISLMLAIARQI 59 (82)
Q Consensus 18 ~d~ID~~~~---~~~gI~v~n~~~~-~~~sVAE~~i~l~L~l~R~~ 59 (82)
.||||+|.| ...||.+.-.|+. -.+.+.|-.+=..+...+.+
T Consensus 182 IDyvDtEwslR~~~~g~~ly~~~d~~l~H~iG~~~v~~~~G~~~~i 227 (291)
T TIGR01556 182 IDYVDTEWSLRALNYGIKLYIIPDIVLEHAIGDSKVRILGGLSKEI 227 (291)
T ss_pred CCEEHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEECCCCEEC
T ss_conf 1334153688888778248851756898530661675413420002
No 32
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=21.75 E-value=46 Score=15.97 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=25.0
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC
Q ss_conf 599981656088333674124413643143243
Q gi|254780152|r 9 KVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41 (82)
Q Consensus 9 k~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~ 41 (82)
+++..+++..+.=|++.++++|..|+.+|.+|.
T Consensus 238 ~~i~~H~~~l~~~d~~lla~~g~~v~~cP~Sn~ 270 (419)
T PRK08393 238 KLIAAHGVWLSSEDIRMLASAGVTVAHCPASNM 270 (419)
T ss_pred CCEECCCCCCCHHHHHHHHHCCCCEEECCCHHH
T ss_conf 535324553787999999984993787723386
No 33
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=21.30 E-value=60 Score=15.36 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=21.1
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEEECCCCC
Q ss_conf 59998165608833367412441364314324
Q gi|254780152|r 9 KVVGRAGIGTDNVDLVVASRAGIVVMNTPFGN 40 (82)
Q Consensus 9 k~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~ 40 (82)
+.+..+++..+.=|++.+.++|..|+.+|.+|
T Consensus 256 ~~~~aH~v~l~d~ei~~la~~g~~v~hcP~Sn 287 (442)
T PRK07203 256 KTLAAHCIYLSKDEIDLLNETDTFVVHNPESN 287 (442)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEEECCHHH
T ss_conf 96887251699999999998398479881026
Done!