RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 526
Score = 141 bits (359), Expect = 3e-35
Identities = 47/79 (59%), Positives = 60/79 (75%)
Query: 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
L AK +KV+GRAG+G DNVD+ A+R GI+V+N P GN+I+ AEH I+LMLA+AR IP
Sbjct: 59 LEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQ 118
Query: 62 ANESTHKGKWEKFNFMGVE 80
A+ S GKWE+ FMGVE
Sbjct: 119 AHASLKAGKWERKKFMGVE 137
>gnl|CDD|162302 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase. This model
represents a long form of D-3-phosphoglycerate
dehydrogenase, the serA gene of one pathway of serine
biosynthesis. Shorter forms, scoring between trusted and
noise cutoff, include SerA from E. coli.
Length = 525
Score = 113 bits (286), Expect = 7e-27
Identities = 39/76 (51%), Positives = 58/76 (76%)
Query: 5 AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64
A K+KV+GRAG+G DN+D+ A+ GI+V+N P GN+I+ AEHA++++LA AR IP A+
Sbjct: 60 APKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADA 119
Query: 65 STHKGKWEKFNFMGVE 80
S +G+W++ FMG E
Sbjct: 120 SLKEGEWDRKAFMGTE 135
>gnl|CDD|183316 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 409
Score = 67.5 bits (166), Expect = 7e-13
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+L+ A+K+ +G IGT+ VDL A++ GI V N PF N+ + AE I ++ + R IP
Sbjct: 69 VLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIP 128
Query: 61 VANESTHKGKWEK 73
N H+G W K
Sbjct: 129 EKNAKAHRGGWNK 141
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed.
Length = 333
Score = 59.8 bits (145), Expect = 2e-10
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+ A ++++V +G DN+D+ A+R GI V NTP + TA+ A +L+LA AR++
Sbjct: 61 VFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLV 120
Query: 61 VANESTHKGKWEK 73
A+ G+W++
Sbjct: 121 EADHFVRSGEWKR 133
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional.
Length = 385
Score = 59.3 bits (144), Expect = 2e-10
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 5 AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64
A +K+ AGIG+D+VDL AS GI V NSI+ AEH + ++LA+ R ++
Sbjct: 112 APNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHR 171
Query: 65 STHKGKW 71
+G W
Sbjct: 172 QAVEGGW 178
>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional.
Length = 317
Score = 52.4 bits (126), Expect = 3e-08
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
L+ A ++K++ A GT+NVDL A GI V N + + A+H ++L+LA+A ++P
Sbjct: 61 LAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPD 120
Query: 62 ANESTHKGKWEK 73
++ G+W++
Sbjct: 121 YQQAVAAGRWQQ 132
>gnl|CDD|178516 PLN02928, PLN02928, oxidoreductase family protein.
Length = 347
Score = 50.1 bits (120), Expect = 1e-07
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP---FGNSITTAEHAISLMLAIAR 57
++ A +MK++ + G+G + VD+ A++ GI V P GN+ + AE AI LML + R
Sbjct: 77 IARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLR 135
>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase.
Length = 386
Score = 46.0 bits (109), Expect = 2e-06
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 16 IGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWE 72
+G +NVD+ A++ GI V NTP + TTAE A SL LA AR+I A+E G +E
Sbjct: 95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYE 151
>gnl|CDD|168735 PRK06932, PRK06932, glycerate dehydrogenase; Provisional.
Length = 314
Score = 45.9 bits (109), Expect = 2e-06
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAI 55
L+ K+K++ GT+NVDLV A GI V N +S T EH + ++ A+
Sbjct: 59 TLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113
>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate
reductase B; Provisional.
Length = 323
Score = 45.9 bits (109), Expect = 2e-06
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+L K++ +G DN D+ + I++M+TP + T A+ ++L+L+ AR++
Sbjct: 60 LLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVV 119
Query: 61 VANESTHKGKWEK 73
E G+W
Sbjct: 120 EVAERVKAGEWTA 132
>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional.
Length = 311
Score = 43.8 bits (104), Expect = 1e-05
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
LS +K++ GT+NVD+ A + GI V N ++ + A+H +++L++ +I
Sbjct: 58 LSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINY 117
Query: 62 ANESTHKGKWEK 73
+ G++ +
Sbjct: 118 YDRYVKSGEYSE 129
>gnl|CDD|102375 PRK06436, PRK06436, glycerate dehydrogenase; Provisional.
Length = 303
Score = 39.5 bits (92), Expect = 2e-04
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 6 KKMKVVGRAGIGTDNVD-------LVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQ 58
KK K++ G D++D +V+ S AG SI+ AEHA +L+LA A+
Sbjct: 48 KKTKMIQSLSAGVDHIDVSGIPENVVLCSNAG--------AYSISVAEHAFALLLAWAKN 99
Query: 59 IPVANESTHKGKWEK 73
I N + G +++
Sbjct: 100 ICENNYNMKNGNFKQ 114
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional.
Length = 386
Score = 39.1 bits (91), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
+ AK ++++ AGIG+D++DL A+ AG+ V N ++ AE + +L + R
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLP 175
Query: 62 ANESTHKGKW 71
G+W
Sbjct: 176 GYHQVVSGEW 185
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB;
Provisional.
Length = 378
Score = 35.3 bits (81), Expect = 0.004
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 6 KKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQ 58
K +K VG A GTD+VD +AGI P N+I E+ S +L +A +
Sbjct: 57 KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER 109
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional.
Length = 330
Score = 34.9 bits (80), Expect = 0.005
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE--S 65
+K + + G D DL +A + IV+ N P + T AE+++S+ L + R+ P
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129
Query: 66 THKGKW 71
H W
Sbjct: 130 AHDFTW 135
>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase;
Validated.
Length = 381
Score = 34.6 bits (80), Expect = 0.006
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
+++ VG IGTD++DL + AGI + P N+ ++ + +L +A
Sbjct: 58 RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAE 108
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 27.9 bits (62), Expect = 0.63
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 13 RAGIGT----DNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
RA IG DN+DL R ++V FG S E I +L AR
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161
>gnl|CDD|183897 PRK13210, PRK13210, putative L-xylulose 5-phosphate 3-epimerase;
Reviewed.
Length = 284
Score = 26.8 bits (60), Expect = 1.3
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 26 ASRAGIV----VMNTPFGNSITTAEH 47
A+ A ++ +M+TPF NSI+ +
Sbjct: 142 AAAAQVMLAVEIMDTPFMNSISKWKK 167
>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated.
Length = 332
Score = 25.9 bits (57), Expect = 2.2
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 17 GTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
G D DL +A++ +++ N P + + AE ++ + + R
Sbjct: 79 GFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVR 119
>gnl|CDD|183896 PRK13209, PRK13209, L-xylulose 5-phosphate 3-epimerase; Reviewed.
Length = 283
Score = 25.7 bits (57), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 26 ASRAGIV----VMNTPFGNSITTA 45
ASRA + +M+TPF NSI+ A
Sbjct: 147 ASRASVTLAFEIMDTPFMNSISKA 170
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 25.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 18 TDNVDLV-VASRAGIVVMNTPFGNSITTAEH 47
TD ++L VA NT FGN+ T +H
Sbjct: 303 TDRINLTPVAIMEATCFANTEFGNNPTKFDH 333
>gnl|CDD|181897 PRK09483, PRK09483, response regulator; Provisional.
Length = 217
Score = 24.3 bits (53), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMN 35
+L K +KVVG A G D V + +V+M+
Sbjct: 20 ILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMD 54
>gnl|CDD|183608 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 24.2 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 39 GNSITTAEHAISLMLAIARQIPVA 62
GNSI EHA+ + A+ +P A
Sbjct: 113 GNSI---EHALMTLAAMQAGVPAA 133
>gnl|CDD|183794 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 484
Score = 23.8 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 21 VDLVVASRAGIVVMNTPFGNSITTAE 46
L SR VVM PFG + +AE
Sbjct: 141 AGLAEGSR---VVMEKPFGTDLASAE 163
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,291,583
Number of extensions: 66473
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 35
Length of query: 82
Length of database: 5,994,473
Length adjustment: 51
Effective length of query: 31
Effective length of database: 4,892,465
Effective search space: 151666415
Effective search space used: 151666415
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)