RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
regulation phosphoglycerate dehydrogenase PGDH,
oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
(A:1-100,A:289-321)
Length = 133
Score = 54.0 bits (130), Expect = 7e-09
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
+++ A+K+ +G IGT+ VDL A++ GI V N PFG S A+ I L +A ++
Sbjct: 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFG-STQEAQENIGLE--VAGKL 118
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
(A:1-111,A:300-332)
Length = 144
Score = 52.2 bits (125), Expect = 3e-08
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
+ + A ++ VG +GT+ V+L A + GI V N PFG S A+ I + R++
Sbjct: 74 IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFG-STEEAQERIGTE--VTRKL 129
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy
acid dehydrogenase, cofactor regenerator, yeast, CBFDH;
HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
(A:1-117,A:314-364)
Length = 168
Score = 51.0 bits (122), Expect = 5e-08
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT 43
+ AKK+K+V AG+G+D++DL ++ G + T
Sbjct: 78 RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGGTT 120
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A* (A:1-98,A:291-334)
Length = 142
Score = 50.9 bits (122), Expect = 6e-08
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
+ +A K+++V +G DN+D+ A++ GI V NTP S
Sbjct: 61 VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDSASFGA 104
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} (A:1-144,A:335-393)
Length = 203
Score = 50.7 bits (121), Expect = 6e-08
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42
++ AK +K+ AGIG+D+VDL A + V +G ++
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYGTTL 148
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, serine
metabolism; HET: NAD; 1.70A {Homo sapiens}
(A:1-120,A:306-335)
Length = 150
Score = 49.2 bits (117), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
+++ A+K++VVGRAG G DNVDL A+R GI+VMNTP + T E IA Q
Sbjct: 83 VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNAS---TKEAQSRCGEEIAVQF 138
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
serine biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} (A:1-97,A:283-322)
Length = 137
Score = 49.1 bits (117), Expect = 2e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
+L+ A K+K+V RAG+G DNVD+ A+ G++V+N P + TAE +A +
Sbjct: 60 VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTAS---TAEAQDRAGTDVAESV 115
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
{Pyrobaculum aerophilum} (A:1-80,A:264-303)
Length = 120
Score = 49.0 bits (117), Expect = 2e-07
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
L+ ++K + G D++ V N
Sbjct: 44 ELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAG 80
>3evt_A Phosphoglycerate dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.20A
{Lactobacillus plantarum} (A:1-91,A:282-324)
Length = 134
Score = 48.7 bits (116), Expect = 3e-07
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
+ ++K V G D + L AG+VV NT
Sbjct: 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTS 91
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
(A)); 2.40A {Hyphomicrobium methylovorum}
(A:1-98,A:289-320)
Length = 130
Score = 48.8 bits (116), Expect = 3e-07
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAE 46
+ + +K + IG D++DL GI V N P + E
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHSAATQARE 106
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B (A:1-111,A:307-348)
Length = 153
Score = 48.5 bits (115), Expect = 3e-07
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 5 AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
+KV AG G D +DL + G+ N+ G +I T
Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGGVAIET 117
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii OT3} (A:1-97,A:284-307)
Length = 121
Score = 48.4 bits (115), Expect = 4e-07
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48
++ A K+KV+ RAG+G DN+D+ A GI V+N P +++ E A
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASTVEAQERA 107
>2o4c_A Erythronate-4-phosphate dehydrogenase;
erythronate-4-phsphate, NAD, tartrate, phosphate ION,
oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
aeruginosa} (A:1-90,A:258-287)
Length = 120
Score = 47.9 bits (114), Expect = 5e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
++ VG IGTD++DL + AGI + P
Sbjct: 52 AALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAP 88
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
thermophilus HB8} (A:1-96,A:280-311)
Length = 128
Score = 47.5 bits (113), Expect = 6e-07
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
++ AK +KV+ +G D+VDL A GI V +TP TT
Sbjct: 59 VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGSAGRTT 102
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent
dehydrogenase, reversible interconversion of pyruvate
INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp}
(A:103-299)
Length = 197
Score = 47.6 bits (112), Expect = 6e-07
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
+ AEHA I RQ +E + +G
Sbjct: 1 SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG 39
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
(A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288)
Length = 190
Score = 47.5 bits (112), Expect = 6e-07
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
G ++ TAE A+ L+L AR+ + W + +
Sbjct: 1 GVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLE 40
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
rossmann fold, formate/glycerate dehydrogenase
substrate-binding domain, oxidoreductase; HET: NDP;
2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A
(A:1-107,A:298-330)
Length = 140
Score = 47.5 bits (113), Expect = 6e-07
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
+KV+ +G D++ L + GI V TP + T
Sbjct: 73 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDSATHRT 113
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
protein; structural genomics, protein structure
initiative; 1.80A {Aeromonas salmonicida subsp}
(A:1-97,A:282-324)
Length = 140
Score = 47.5 bits (113), Expect = 6e-07
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLML 53
+L+ A K+ G D + R + N + + + + +
Sbjct: 61 LLAKANKLSWFQSTYAGVDVLL-DARCRRDYQLTNVR--GAYSFPDDVAQIFV 110
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD,
3D-structure, structural genomics, NPPSFA; HET: MSE NAD;
2.12A {Aquifex aeolicus VF5} (A:)
Length = 334
Score = 47.4 bits (111), Expect = 7e-07
Identities = 16/77 (20%), Positives = 40/77 (51%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+LS ++K++ +G D++DL + GI+V + P + + AEH + +L + +++
Sbjct: 58 LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLK 117
Query: 61 VANESTHKGKWEKFNFM 77
+ K + + + +
Sbjct: 118 RIEDRVKKLNFSQDSEI 134
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepressor,
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
(A:1-116,A:312-347)
Length = 152
Score = 46.9 bits (111), Expect = 1e-06
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
L K ++++ R G G DN+D+ A GI V N P
Sbjct: 79 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP 115
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
(A:112-299)
Length = 188
Score = 46.8 bits (110), Expect = 1e-06
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
N+ + AE I ++ + R+I + S H G WEK E
Sbjct: 2 NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE 42
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei}
(A:1-100,A:298-333)
Length = 136
Score = 46.1 bits (109), Expect = 1e-06
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEH 47
+K + +GTDN+D+ + GI + N P TA H
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYYYTETAVH 108
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: NAD; 1.77A {Sulfolobus
tokodaii} (A:100-285)
Length = 186
Score = 46.3 bits (109), Expect = 2e-06
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
++ + E I LM+A AR++ + G ++K
Sbjct: 1 ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKI 36
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.95A {Pyrococcus horikoshii OT3} (A:1-94,A:287-333)
Length = 141
Score = 46.0 bits (109), Expect = 2e-06
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
+L +A+++KV+ G DN+DL A++ GI V
Sbjct: 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVS 94
>3evt_A Phosphoglycerate dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.20A
{Lactobacillus plantarum} (A:92-281)
Length = 190
Score = 46.0 bits (108), Expect = 2e-06
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
++ +E ++ ML++ R A + +
Sbjct: 3 HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST 43
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: NAD; 1.77A {Sulfolobus
tokodaii} (A:1-99,A:286-313)
Length = 127
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41
++ KK+K++ RAGIG DN+D A + I V+ P +
Sbjct: 62 VIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGAQT 102
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase;
oxidoreductase, phosphoglycerate dehydrogenase
deficiency, serine metabolism; HET: NAD; 1.70A {Homo
sapiens} (A:121-305)
Length = 185
Score = 46.1 bits (108), Expect = 2e-06
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
GNS++ AE +++ +ARQIP A S GKWE+ FMG E
Sbjct: 1 GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 42
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor binding domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A* (A:1-118,A:302-333)
Length = 150
Score = 45.7 bits (108), Expect = 2e-06
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
++ K+++V +G D VDL+ G+ V NTP ++ T
Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDSGTVET 124
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2-
hydroxy acid dehydrogenase, cofactor regenerator,
yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB:
2fss_A (A:118-313)
Length = 196
Score = 45.3 bits (106), Expect = 3e-06
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
N ++ AEH + ML + R A+E WE
Sbjct: 2 NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIA 39
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
regulation phosphoglycerate dehydrogenase PGDH,
oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
(A:101-288)
Length = 188
Score = 45.4 bits (106), Expect = 3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
N+ + AE I +L + R +P AN H+G K E
Sbjct: 2 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 42
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
protein; structural genomics, protein structure
initiative; 1.80A {Aeromonas salmonicida subsp}
(A:98-281)
Length = 184
Score = 44.9 bits (105), Expect = 4e-06
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
+E+ +L++ RQ+P+ E + W+
Sbjct: 2 FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH 36
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
structural variant of the BAB rossmann fold,
oxidoreductase; 1.98A {Acidaminococcus fermentans}
(A:1-101,A:300-331)
Length = 133
Score = 44.9 bits (106), Expect = 4e-06
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
+K + GTD++D A G + P
Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVP 99
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
structural variant of the BAB rossmann fold,
oxidoreductase; 1.98A {Acidaminococcus fermentans}
(A:102-299)
Length = 198
Score = 44.6 bits (104), Expect = 5e-06
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
+ AE A++ + + R T K ++ FM
Sbjct: 1 SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM 38
>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm,
NAD, structural genomics; HET: NDP NDB EPE; 2.14A
{Salmonella enterica subsp} (A:96-280)
Length = 185
Score = 44.5 bits (104), Expect = 5e-06
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
G + E+A+S +L R+ ++ W+
Sbjct: 2 GXGLQXQEYAVSQVLHWFRRFDDYQALKNQALWKPL 37
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
serine biosynthesis, structural genomics, PSI, protein
structure initiative; HET: TAR; 2.30A {Mycobacterium
tuberculosis} (A:98-282)
Length = 185
Score = 44.5 bits (104), Expect = 5e-06
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
N + AEHA++L+LA +RQIP A+ S + W++ +F G E
Sbjct: 2 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE 42
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
thermophilus HB8} (A:97-279)
Length = 183
Score = 44.5 bits (104), Expect = 5e-06
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
+ TA+ ++L+LA+AR++ G W+ ++
Sbjct: 2 LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPEL 40
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} (A:145-334)
Length = 190
Score = 44.5 bits (104), Expect = 5e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
NSI+ AEH + ++L++ R ++E KG W
Sbjct: 2 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI 35
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
rossmann fold, formate/glycerate dehydrogenase
substrate-binding domain, oxidoreductase; HET: NDP;
2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297)
Length = 190
Score = 44.5 bits (104), Expect = 5e-06
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK---FNFMGVE 80
+ TTAE A+SL+L R++P A E G W G
Sbjct: 2 LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG 45
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii OT3} (A:98-283)
Length = 186
Score = 44.2 bits (103), Expect = 6e-06
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
+S + AE A+ LM ++AR+I A+ +G W K MG+E
Sbjct: 2 SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 42
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B (A:112-306)
Length = 195
Score = 43.8 bits (102), Expect = 7e-06
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
T++ A+ L+L++ R + + G E FN +
Sbjct: 2 GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRV 39
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor binding domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A* (A:119-301)
Length = 183
Score = 43.7 bits (102), Expect = 8e-06
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
+ A+ AI L+LA+ R+I ++ +G W+ +F
Sbjct: 2 LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFK 39
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
structural genomics, NPPSFA; HET: NAP; 1.70A
{Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290)
Length = 192
Score = 43.6 bits (102), Expect = 8e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
+ TA+ A +L+LA AR + + G+W+K
Sbjct: 2 LTDATADLAFALLLATARHVVKGDRFVRSGEWKK 35
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp}
(A:1-102,A:300-333)
Length = 136
Score = 43.4 bits (102), Expect = 1e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIA 56
+ + +G DN+D+ A G + N P TT HA+ M+ A
Sbjct: 67 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP-VYFYTT--HAVRNMVVKA 116
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
{Pyrobaculum aerophilum} (A:81-263)
Length = 183
Score = 42.9 bits (100), Expect = 1e-05
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71
N+ AE A++L+LA ++I E +G +
Sbjct: 2 NADAVAEFALALLLAPYKRIIQYGEKXKRGDY 33
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II,
11143J, structural genomics, protein structure
initiative; 2.20A {Thermoplasma acidophilum} (A:79-259)
Length = 181
Score = 42.9 bits (100), Expect = 2e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
SI+ AEHA +L+LA A+ I NE G + +
Sbjct: 3 YSISVAEHAFALLLAHAKNILENNELXKAGIFRQS 37
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepressor,
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
(A:117-311)
Length = 195
Score = 42.7 bits (99), Expect = 2e-05
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWE 72
+ TA+ + +L + R+ +++ +G
Sbjct: 2 SVEETADSTLCHILNLYRRATWLHQALREGTRV 34
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.95A {Pyrococcus horikoshii OT3} (A:95-286)
Length = 192
Score = 42.2 bits (98), Expect = 3e-05
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
S AE + L++ + R+I A++ +G+WE
Sbjct: 3 LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES 36
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
structural genomics, PSI-2, protein structure
initiative; 1.90A {Ralstonia solanacearum} (A:108-302)
Length = 195
Score = 41.8 bits (97), Expect = 3e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
+ AE +L++A R+IP S G W++
Sbjct: 2 VAPAELTWALVMAAQRRIPQYVASLKHGAWQQ 33
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
structural genomics, PSI-2, protein structure
initiative; 1.90A {Ralstonia solanacearum}
(A:1-107,A:303-352)
Length = 157
Score = 41.0 bits (96), Expect = 5e-05
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 1 MLSHAKKMKVVGRAG----IGTDNVDLVVASRAGIVVMNTPF 38
+L K+K++ + G ++DL + G+VV+
Sbjct: 65 LLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG 106
>1dxy_A D-2-hydroxyisocaproate dehydrogenase;
D-2-hydroxycarboxylate dehydrogenase, D-lactate
dehydrogenase, oxidoreductase; HET: NAD; 1.86A
{Lactobacillus casei} (A:101-297)
Length = 197
Score = 40.7 bits (94), Expect = 8e-05
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
AE A++ L + R + G +EK
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38
>2o4c_A Erythronate-4-phosphate dehydrogenase;
erythronate-4-phsphate, NAD, tartrate, phosphate ION,
oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
aeruginosa} (A:91-257)
Length = 167
Score = 36.3 bits (83), Expect = 0.001
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71
N+ ++ + +LA+A G
Sbjct: 1 NARGVVDYVLGCLLAMAEVRGADLAERTYGVV 32
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET:
NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A*
2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318)
Length = 194
Score = 31.7 bits (71), Expect = 0.033
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 11/50 (22%)
Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79
G + + P +E A L + GV
Sbjct: 1 GALPLLAP------MSEVAGRLAAQVGAYH-----LMRTQGGRGVLMGGV 39
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET:
NA7; 2.5A {Homo sapiens} (A:1-193)
Length = 193
Score = 29.2 bits (64), Expect = 0.21
Identities = 2/26 (7%), Positives = 6/26 (23%)
Query: 52 MLAIARQIPVANESTHKGKWEKFNFM 77
M + T ++ +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGSI 26
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A* (A:1-204)
Length = 204
Score = 28.7 bits (63), Expect = 0.28
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 52 MLAIARQIPVANESTHKGKWEK 73
M + ++ +G K
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMK 22
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.71A {Thermus thermophilus HB8}
(A:123-315)
Length = 193
Score = 28.3 bits (62), Expect = 0.33
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 11/50 (22%)
Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79
G + + P +E A + + Q GV
Sbjct: 1 GTLPLLVP------MSEVAGRMAPQVGAQFLEKP-----KGGRGVLLGGV 39
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; HET: MSE TAR; 2.10A
{Bacillus halodurans} (A:126-269)
Length = 144
Score = 26.9 bits (59), Expect = 0.87
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58
+ NSI TAE I +
Sbjct: 3 DIAIYNSIPTAEGTIXXAIQHTDF 26
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB:
2p2d_A 2p2n_A 2ocd_A (A:229-358)
Length = 130
Score = 26.3 bits (58), Expect = 1.4
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
GI D V + +++ + GN+ L A R I V N +
Sbjct: 11 PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLT 63
>2rir_A Dipicolinate synthase, A chain; structural genomics,
APC1343, PSI-2, protein structure initiative, midwest
center for structural genomics; HET: MSE NAP; 2.79A
{Bacillus subtilis} (A:128-271)
Length = 144
Score = 26.1 bits (57), Expect = 1.5
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58
+ NSI T E I L +
Sbjct: 3 DIAIYNSIPTVEGTIXLAIQHTDY 26
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A
{Pyrococcus horikoshii} PDB: 1wnf_A (A:199-328)
Length = 130
Score = 25.5 bits (56), Expect = 2.3
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
G+ D V + GI++ G ++ +I+++IPV +
Sbjct: 11 PGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTT 63
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD;
HET: NAD; 2.00A {Phormidium lapideum} (A:124-315)
Length = 192
Score = 24.8 bits (53), Expect = 4.0
Identities = 1/32 (3%), Positives = 8/32 (25%)
Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
+ ++A + + + +
Sbjct: 2 SLPLLTPMSIIAGRLSVQFGARFLERQQGGRG 33
Score = 23.6 bits (50), Expect = 8.6
Identities = 3/37 (8%), Positives = 7/37 (18%), Gaps = 4/37 (10%)
Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
+ A L + + +G
Sbjct: 9 MSIIAGRLSVQFGARFLER----QQGGRGVLLGGVPG 41
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel,
beta-structure for C-terminal domain, internal/external
aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A
{Pseudomonas aeruginosa} (A:1-10,A:222-357)
Length = 146
Score = 24.7 bits (54), Expect = 4.5
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48
+ K ++VGR + VDL +AG+ +G ++ A
Sbjct: 75 VFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALA 122
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A* (A:273-462)
Length = 190
Score = 24.7 bits (52), Expect = 4.8
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 28 RAGIVVMNTPFG 39
GIV +N P
Sbjct: 178 DCGIVNVNIPTS 189
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A
{Plasmodium falciparum 3D7} (A:227-394)
Length = 168
Score = 24.5 bits (52), Expect = 5.2
Identities = 2/28 (7%), Positives = 5/28 (17%), Gaps = 1/28 (3%)
Query: 54 AIARQIPVANESTHKGKWEKFN-FMGVE 80
A+ +Q +
Sbjct: 1 AVTKQKYDNVYGCRHSLPDGLMRATDFL 28
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase;
bifunctional(isomerase and synthase); 2.00A {Escherichia
coli} (A:241-452)
Length = 212
Score = 24.4 bits (52), Expect = 5.2
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNT 36
+L+ V+ G+G DN + + N+
Sbjct: 153 LLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNS 188
>2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1,
ethanolamine ammonia lyase large subunit (EUTB),
structural genomics; HET: MSE; 2.15A {Listeria
monocytogenes str} (A:)
Length = 455
Score = 24.2 bits (53), Expect = 5.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 21 VDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
LV S AG NT FG T E A L L
Sbjct: 242 TGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSGA 278
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
Length = 163
Score = 24.0 bits (51), Expect = 6.9
Identities = 1/28 (3%), Positives = 6/28 (21%), Gaps = 1/28 (3%)
Query: 54 AIARQIPVANESTHKGKWEK-FNFMGVE 80
++ + + + V
Sbjct: 1 SVTKSKFDNLYGCRESLVDGIKRATDVM 28
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 566,677
Number of extensions: 19213
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 75
Length of query: 82
Length of database: 4,956,049
Length adjustment: 46
Effective length of query: 36
Effective length of database: 3,401,019
Effective search space: 122436684
Effective search space used: 122436684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)