RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 63.4 bits (154), Expect = 5e-12
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA--------ISLM 52
++ AK +K+ AGIG+D+VDL A + V + NS T A I
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILEC 166
Query: 53 LAIARQIPVANESTHKGKW 71
R I G
Sbjct: 167 FFEGRPIRDEYLIVQGGAL 185
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 59.2 bits (143), Expect = 9e-11
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
+ + +G DN+D+ A G + N P + HA+ M+ A N
Sbjct: 66 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDN---N 119
Query: 64 ESTHKGKWEKF 74
+GK +
Sbjct: 120 LELVEGKEAET 130
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 56.9 bits (137), Expect = 4e-10
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
L K ++++ R G G DN+D+ A GI V N P S+ + + +I + AR+I
Sbjct: 59 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP-AASVYSEQASIEMREEAAREIR 117
Query: 61 VANESTHKGKW 71
A
Sbjct: 118 RAITGRIPDSL 128
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 55.8 bits (134), Expect = 1e-09
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
HA +K + +GTDN+D+ + GI + N P + + +
Sbjct: 65 HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124
Query: 64 ESTHKG 69
ST
Sbjct: 125 TSTEVT 130
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 54.2 bits (130), Expect = 3e-09
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
+K + IG D++DL GI V N P G + + A I A+ S
Sbjct: 67 NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGADMS 125
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 53.6 bits (128), Expect = 4e-09
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
A K+K+V RAG+G DNVD+ A+ G++V+N P S A+ +A + ++ +A
Sbjct: 61 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120
Query: 64 ESTHKGKW 71
E
Sbjct: 121 EFVPDAVN 128
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 48.4 bits (114), Expect = 1e-07
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
N + AEHA++L+LA +RQIP A+ S + W++ +F
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS 38
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 197
Score = 48.3 bits (113), Expect = 2e-07
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
AEHA I RQ +E + +G E
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE 40
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 48.1 bits (113), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
N+ + AE I +L + R +P AN H+G K E
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 41
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas
sp., strain 101 [TaxId: 306]}
Length = 188
Score = 47.3 bits (111), Expect = 3e-07
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
I+ AEH + ++L++ R ++E KG W + +
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 37
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 46.4 bits (109), Expect = 6e-07
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
++ TAE A+ L+L AR+ + W + +
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPL 38
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 46.1 bits (109), Expect = 8e-07
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
L+ ++K + G D++ + V N +++ R +
Sbjct: 44 ELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVRNL 101
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 45.8 bits (108), Expect = 1e-06
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+++ A+K+ +G IGT+ VDL A++ GI V N PF ++ E+ + + I
Sbjct: 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120
Query: 61 VANESTHKGKW 71
++ +
Sbjct: 121 YSDNGSTLSAV 131
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 45.5 bits (106), Expect = 1e-06
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEAG 82
AE A++L+LA ++I E +G + + + + G
Sbjct: 3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQG 42
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 44.8 bits (104), Expect = 2e-06
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
AE A++ L + R + G +EK
Sbjct: 5 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 44.7 bits (104), Expect = 2e-06
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEK 73
TA+ + +L + R+ +++ +G +
Sbjct: 2 ETADSTLCHILNLYRRATWLHQALREGTRVQ 32
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 23.8 bits (51), Expect = 4.6
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA-ISLMLAIARQIPVA 62
HA +K + D LVV++ G + T EH ++ + + +
Sbjct: 77 HADYIKNMITGAAQMDGAILVVSAADGPMPQ---------TREHILLARQVGVPYIVVFM 127
Query: 63 NESTHKGKWEKFN 75
N+ E +
Sbjct: 128 NKVDMVDDPELLD 140
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 23.7 bits (51), Expect = 4.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 32 VVMNTPFGNSITTAEHAISLMLAIARQIPVANESTH 67
VV++ G+ +A ++ I Q+PV ++
Sbjct: 12 VVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKR 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,241
Number of extensions: 9851
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 22
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)