HHsearch alignment for GI: 254780153 and conserved domain: COG0076
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].
Probab=99.24 E-value=8.8e-09 Score=75.20 Aligned_cols=278 Identities=16% Similarity=0.113 Sum_probs=172.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC---C
Q ss_conf 688877689689999863210---3653289889999999999999996889985799974873489998753205---7
Q gi|254780153|r 16 FSSGPCAKRPGWSLGILEGAL---LGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL---G 89 (391)
Q Consensus 16 F~pGP~~~~p~~v~~~~~~~~---l~~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~---~ 89 (391)
T Consensus 67 ~~~~~~~~-~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~-t~GgTean~lal~aar~~~~ 144 (460)
T COG0076 67 AGFCPTRV-PPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTF-TSGGTEANLLALLAARERWR 144 (460)
T ss_pred ECCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE-ECCHHHHHHHHHHHHHHHHH
T ss_conf 63578886-79999999998734799812383158889999999999957997660679-61707999999999999987
Q ss_pred C--C--------C-EEE-EEECCHHHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHCC----CCCC---EEEEEEECCCC
Q ss_conf 8--9--------7-079-97073688888765323876306740577-7657867678----5565---79974202420
Q gi|254780153|r 90 Y--R--------G-VDV-LAWESFGLGWMSDIRQLSLQDVREFTAPY-GSLPDFSKVD----FDRD---VVFVWNGTTSG 149 (391)
Q Consensus 90 ~--~--------~-~~~-~~~g~~~~r~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~----~~~~---v~~~h~ETstG 149 (391)
T Consensus 145 ~~~~~~~~~~~~~P~ii~s~~aH~s~~---Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G 221 (460)
T COG0076 145 KRALAESGKPGGKPNIVCSETAHFSFE---KAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTG 221 (460)
T ss_pred HHHHHCCCCCCCCCEEEECCCCCEEHH---HHHHHHCCCCEEEEEECCCEEECHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 664420234468874994574312099---99998188523787524750568999999998746476499972688887
Q ss_pred EEECCEEE--ECCCCCCEEEEEECCHHHHCCCC---------CCCCEEEEECCHHCCCCCCCCEEEEECHH-HHHHHHHC
Q ss_conf 22032035--02568614886401101102545---------56857999700120017665154456778-88765411
Q gi|254780153|r 150 VCVPDVGF--IPESREGLVICDATSAVFARHID---------FNKLDVVTFSAQKVLGGEAGFGIIILSPA-SVERLEKY 217 (391)
Q Consensus 150 v~~~~~~~--~~~~~~~llivD~vSs~g~~p~d---------~~~iDv~~a~sQK~l~~ppGl~~v~~s~~-al~~~~~~ 217 (391)
T Consensus 222 ~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~ 301 (460)
T COG0076 222 SIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIF 301 (460)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHC
T ss_conf 77889999999997699789873440021102474225351788820899886427788887069999688984677612
Q ss_pred CCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44577831232001123210334786446664488999999998620103189999999977999999987479716766
Q gi|254780153|r 218 VPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLA 297 (391)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~ 297 (391)
T Consensus 302 ~~-~yl~~~-----------~~~~~ti~~sr~~~~~~~~~~~l~~lG~e-Gy~~l~~~~~~~a~~la~~l~~~~~~e~~~ 368 (460)
T COG0076 302 AD-YYLPGG-----------GIPNFTILGSRPGRQALALYANLRRLGRE-GYRKLLDRTLELARYLAEELEKLGDFELVN 368 (460)
T ss_pred CC-CCCCCC-----------CCCCEEEEEECCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 36-677877-----------86663688505418999999999996788-899999999999999999986478827633
Q ss_pred CCCCCCCCCEEEEEECCC
Q ss_conf 882003653178982473
Q gi|254780153|r 298 VDETTRSNTSICMKIVDS 315 (391)
Q Consensus 298 ~~~~~rS~~~v~~~~~d~ 315 (391)
T Consensus 369 -~p---~l~~V~fr~~~~ 382 (460)
T COG0076 369 -EP---ELPIVAFRLKDD 382 (460)
T ss_pred -CC---CCEEEEEECCCC
T ss_conf -88---650799965764