HHsearch alignment for GI: 254780153 and conserved domain: COG0403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=98.03 E-value=0.0013 Score=42.42 Aligned_cols=307 Identities=17% Similarity=0.069 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC-CC--CCEEEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999999999999996889985799974873489998753205-78--97079970736888887653238763067405
Q gi|254780153|r 46 GKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL-GY--RGVDVLAWESFGLGWMSDIRQLSLQDVREFTA 122 (391)
Q Consensus 46 f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~-~~--~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 122 (391)
T Consensus 118 rLqaLfefQtlv~dLTGm~VAN-ASm~D-eaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~ 195 (450)
T COG0403 118 RLEALFEFQTLVADLTGLDVAN-ASMLD-EATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVV 195 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC-CHHHH-HHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999998999999985887445-00231-676999999999874147673499668868779999986112576399995
Q ss_pred CCCCCCCHHHCCCCCC--EEEEEEECCCCEEEC-CEEE--ECCCCCCEEEE--EECCHHHHCCCCCCCCEEEEECCHHCC
Q ss_conf 7776578676785565--799742024202203-2035--02568614886--401101102545568579997001200
Q gi|254780153|r 123 PYGSLPDFSKVDFDRD--VVFVWNGTTSGVCVP-DVGF--IPESREGLVIC--DATSAVFARHIDFNKLDVVTFSAQKVL 195 (391)
Q Consensus 123 ~~g~~~~~~~~~~~~~--v~~~h~ETstGv~~~-~~~~--~~~~~~~lliv--D~vSs~g~~p~d~~~iDv~~a~sQK~l 195 (391)
T Consensus 196 ~~~d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~Qr-f 273 (450)
T COG0403 196 DADDLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQR-F 273 (450)
T ss_pred CCCHHHHHHHC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCCEEEECCCC-C
T ss_conf 64225566532-467737999976888773414099999998635977999826367645578410378669733760-4
Q ss_pred CCCC-----CCEEEEECHHHHHHHHHCC-----CCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--HHHH
Q ss_conf 1766-----5154456778887654114-----45778312320011232103347864466644889999999--9862
Q gi|254780153|r 196 GGEA-----GFGIIILSPASVERLEKYV-----PSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDA--LLWL 263 (391)
Q Consensus 196 ~~pp-----Gl~~v~~s~~al~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~--l~~i 263 (391)
T Consensus 274 GvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~-~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~h 352 (450)
T COG0403 274 GVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGK-RAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYH 352 (450)
T ss_pred CCCCCCCCCCEEEEEEHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77767887563222375867425998433046458998-03201287788887640010155489999999999999986
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 0103189999999977999999987479-716766882003653178982473101137345678889999988862828
Q gi|254780153|r 264 KKMGGLSACVERCNANAAVLFQFIQEND-WIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIA 342 (391)
Q Consensus 264 ~~~gGl~~~~~r~~~~a~~l~~~i~~~~-~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 342 (391)
T Consensus 353 Gp-~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~-~~---~fFdt~~v~~~~-~-------~~----~~----l~~~~~~ 411 (450)
T COG0403 353 GP-QGLKEIAERIHRLAAYLAAGLKEIGAGVELV-FD---HFFDTFTVRVPE-E-------VA----EA----LLAAAIA 411 (450)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CC---CCEEEEEEECCH-H-------HH----HH----HHHHHHH
T ss_conf 96-8899999999999999999876458864751-42---422048886463-6-------79----99----9999985
Q ss_pred ECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 726655676750568615888999999999999999
Q gi|254780153|r 343 YDIGSYRDAPLGLRVWVGVTVEKEDLLLLCDWLRWV 378 (391)
Q Consensus 343 ~~~~~~r~~~~~~RIg~~g~i~~~dv~~L~~aLe~~ 378 (391)
T Consensus 412 ~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 412 GGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred CCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 497414544881599951256789999999997533