HHsearch alignment for GI: 254780153 and conserved domain: COG0520
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=8.1e-31 Score=215.21 Aligned_cols=348 Identities=17% Similarity=0.193 Sum_probs=256.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCC---CCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 886888776896899998632103---653289-----889999999999999996889985799974873489998753
Q gi|254780153|r 14 PFFSSGPCAKRPGWSLGILEGALL---GRSHRC-----VLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALW 85 (391)
Q Consensus 14 ~~F~pGP~~~~p~~v~~~~~~~~l---~~sHRs-----~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~ 85 (391)
T Consensus 24 vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvf-t~~tT~aln~va~ 102 (405)
T COG0520 24 VYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVF-TRGTTEALNLVAR 102 (405)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCHHHHHHHHHH
T ss_conf 763676566678899999999999740245755441279999999999999999819998772999-5983799999999
Q ss_pred HC---CCCCCEEEEEECCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHC-----CCCCCEEEEEEECCCCEEECC
Q ss_conf 20---578970799707368---8888765323876306740577765786767-----855657997420242022032
Q gi|254780153|r 86 SL---LGYRGVDVLAWESFG---LGWMSDIRQLSLQDVREFTAPYGSLPDFSKV-----DFDRDVVFVWNGTTSGVCVPD 154 (391)
Q Consensus 86 nl---~~~~~~~~~~~g~~~---~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~v~~~h~ETstGv~~~~ 154 (391)
T Consensus 103 ~l~~~~~~gdeIv~s~~EH~sn~~pw-~~~~~~~Ga~v~~i~~~~~g~~~~d~~~~~i~~~Tklvais~vSn~tG~~~pv 181 (405)
T COG0520 103 GLGRSLKPGDEIVVSDLEHHSNIVPW-QELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPV 181 (405)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHH-HHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCH
T ss_conf 70241068998998046552008999-99998759689998418999728899986469994499996641675540409
Q ss_pred EEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 035--0256861488640110110254556--857999700120017665154456778887654114457783123200
Q gi|254780153|r 155 VGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMV 230 (391)
Q Consensus 155 ~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~ 230 (391)
T Consensus 182 ~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~ 261 (405)
T COG0520 182 KEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRD 261 (405)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 99999999849989997713347566885561898999767432579985299998665584378977788724401445
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11232103347864466644889999999986201031899999999779999999874797167668820036531789
Q gi|254780153|r 231 KGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICM 310 (391)
Q Consensus 231 ~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~ 310 (391)
T Consensus 262 ~~~~~~~~p~r-fe~gTpn~~~~i~l~aAl~~~~~i-g~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r-~~~vsF 338 (405)
T COG0520 262 EGVTLAELPLR-FEAGTPNIAGAIGLAAALDYLLEI-GMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADR-GGIVSF 338 (405)
T ss_pred CCCEECCCHHH-CCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCEEEE
T ss_conf 55301564153-155784378898699999999985-799999999999999999985489849964663467-746999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 82473101137345678889999988862828726655676--------750568615888999999999999999
Q gi|254780153|r 311 KIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA--------PLGLRVWVGVTVEKEDLLLLCDWLRWV 378 (391)
Q Consensus 311 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~--------~~~~RIg~~g~i~~~dv~~L~~aLe~~ 378 (391)
T Consensus 339 ~v~~~------------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~ 402 (405)
T COG0520 339 NVKGI------------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKA 402 (405)
T ss_pred EECCC------------CHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 97895------------98999999986786998256443267875377775799974259999999999999987