HHsearch alignment for GI: 254780153 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.92 E-value=7.2e-22 Score=158.37 Aligned_cols=327 Identities=19% Similarity=0.142 Sum_probs=235.1
Q ss_pred CCCCHHHHHHHHHHHCCCC------CCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHC--CC--
Q ss_conf 7689689999863210365------328-988999999999999999688998579997487348999875320--57--
Q gi|254780153|r 21 CAKRPGWSLGILEGALLGR------SHR-CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSL--LG-- 89 (391)
Q Consensus 21 ~~~~p~~v~~~~~~~~l~~------sHR-s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl--~~-- 89 (391)
T Consensus 11 Tp~~~~-v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiF-TSG~TEsnNlaI~g~~~a~~~ 87 (386)
T COG1104 11 TPVDPE-VLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP-EEIIF-TSGATESNNLAIKGAALAYRN 87 (386)
T ss_pred CCCCHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEE-ECCCCHHHHHHHHHHHHHHHC
T ss_conf 889899-999999998753189611557579999999999999999839997-80899-569847777999864876423
Q ss_pred -CCCEEEEEE--CCHHHH-HHHHHHHCCCCCEEEEECCCCCCCCHHHCCCC-----CCEEEEEEECCCCEEECCEEE--E
Q ss_conf -897079970--736888-88765323876306740577765786767855-----657997420242022032035--0
Q gi|254780153|r 90 -YRGVDVLAW--ESFGLG-WMSDIRQLSLQDVREFTAPYGSLPDFSKVDFD-----RDVVFVWNGTTSGVCVPDVGF--I 158 (391)
Q Consensus 90 -~~~~~~~~~--g~~~~r-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~v~~~h~ETstGv~~~~~~~--~ 158 (391)
T Consensus 88 ~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i 166 (386)
T COG1104 88 AQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEI 166 (386)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCEEECCCHHHHHHH
T ss_conf 568985887554349999999999-8669757996888897287999998638884599998502682011209999999
Q ss_pred CCCCCCEEEEEECCHHHHCCCCCCC--CEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHH
Q ss_conf 2568614886401101102545568--57999700120017665154456778887654114457783123200112321
Q gi|254780153|r 159 PESREGLVICDATSAVFARHIDFNK--LDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVM 236 (391)
Q Consensus 159 ~~~~~~llivD~vSs~g~~p~d~~~--iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
T Consensus 167 ~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~--~~~p~-----------i-----~G 227 (386)
T COG1104 167 CKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGV--RLEPL-----------I-----HG 227 (386)
T ss_pred HHHCCCEEEEEHHHHCCCEECCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCCC--CCCCE-----------E-----EC
T ss_conf 9975981797613325760046021576568731121-3699842799987998--73744-----------6-----04
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 033478644666448899999999862010318999999997799999998747-9716766882003653178982473
Q gi|254780153|r 237 EGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQEN-DWIENLAVDETTRSNTSICMKIVDS 315 (391)
Q Consensus 237 ~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~-~~~~~~~~~~~~rS~~~v~~~~~d~ 315 (391)
T Consensus 228 GgQE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~~~~p~~~~~-g~~~~rlP~~~~~~f~gv 304 (386)
T COG1104 228 GGQERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLLEIIPDVYLN-GDDEPRLPNILNFSFPGV 304 (386)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCEEEEEECCC
T ss_conf 767899788875579999999999999987--78889999999999999998509968986-885457898689996897
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC-------------------CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 1011373456788899999888628287266556767-------------------505686158889999999999999
Q gi|254780153|r 316 DIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAP-------------------LGLRVWVGVTVEKEDLLLLCDWLR 376 (391)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~-------------------~~~RIg~~g~i~~~dv~~L~~aLe 376 (391)
T Consensus 305 ~g------------E~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~ 372 (386)
T COG1104 305 EG------------ESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALK 372 (386)
T ss_pred CH------------HHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 57------------899986104086873364345899871499998099968837248997379998999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780153|r 377 WVFYFQKIS 385 (391)
Q Consensus 377 ~~~~~~k~~ 385 (391)
T Consensus 373 ~~i~~lr~~ 381 (386)
T COG1104 373 EIIKRLREL 381 (386)
T ss_pred HHHHHHHHH
T ss_conf 999998630