HHsearch alignment for GI: 254780153 and conserved domain: COG1167
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].
Probab=98.39 E-value=0.00022 Score=47.30 Aligned_cols=327 Identities=15% Similarity=0.077 Sum_probs=174.1
Q ss_pred CCCCCCCCC-CC-CCCHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
Q ss_conf 998886888-77-68968999986321036--------532898899999999999999968899857999748734899
Q gi|254780153|r 11 PKRPFFSSG-PC-AKRPGWSLGILEGALLG--------RSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAV 80 (391)
Q Consensus 11 p~~~~F~pG-P~-~~~p~~v~~~~~~~~l~--------~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ 80 (391)
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHH
T ss_conf 75547688998810188899999999998505612332268768889999999999999749988830389806499999
Q ss_pred HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCHHHCCC------CCCEEE-EEEECCCCEEE
Q ss_conf 98753205789707997073688888765323876306740-57776578676785------565799-74202420220
Q gi|254780153|r 81 EMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFT-APYGSLPDFSKVDF------DRDVVF-VWNGTTSGVCV 152 (391)
Q Consensus 81 ea~~~nl~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~------~~~v~~-~h~ETstGv~~ 152 (391)
T Consensus 169 ~l~~~~l~~pGd~v~vE~PtY~~~-~~~~~~~g-~~~~~vp~d~~G~--~~e~le~~~~~~~~k~~y~~P~~qNPtG~tm 244 (459)
T COG1167 169 DLLLRLLLDPGDTVLVEDPTYPGA-LQALEALG-ARVIPVPVDEDGI--DPEALEEALAQWKPKAVYVTPTFQNPTGVTM 244 (459)
T ss_pred HHHHHHHCCCCCEEEECCCCHHHH-HHHHHHCC-CCEEEECCCCCCC--CHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 999998479999999899982899-99999869-9478606788898--9799999985069728997889638898745
Q ss_pred CCEEE-----ECCCCCCEEEEEECCHHHHC---CCC-CCCC----EEEE-ECCHHCCCCCCCCEEEEECHHHHHHHHHCC
Q ss_conf 32035-----02568614886401101102---545-5685----7999-700120017665154456778887654114
Q gi|254780153|r 153 PDVGF-----IPESREGLVICDATSAVFAR---HID-FNKL----DVVT-FSAQKVLGGEAGFGIIILSPASVERLEKYV 218 (391)
Q Consensus 153 ~~~~~-----~~~~~~~llivD~vSs~g~~---p~d-~~~i----Dv~~-a~sQK~l~~ppGl~~v~~s~~al~~~~~~~ 218 (391)
T Consensus 245 s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k 324 (459)
T COG1167 245 SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLK 324 (459)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHCCCCCEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99999999999997598799867743321588998345762899978999132665146755499972999999999998
Q ss_pred CCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 45778312320011232103347864466644889999999986201031----89999999977999999987479716
Q gi|254780153|r 219 PSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGG----LSACVERCNANAAVLFQFIQENDWIE 294 (391)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gG----l~~~~~r~~~~a~~l~~~i~~~~~~~ 294 (391)
T Consensus 325 -----------------------~~~~~~~s~~~Q~~la~---~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 325 -----------------------QAADLGPSSLSQAALAA---FLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred -----------------------HHHCCCCCHHHHHHHHH---HHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -----------------------76256998999999999---997-285999999999999999999999999747876
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECC-CCCCC----CCCEEEEECCCCCCHHHHH
Q ss_conf 766882003653178982473101137345678889999988862828726-65567----6750568615888999999
Q gi|254780153|r 295 NLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDI-GSYRD----APLGLRVWVGVTVEKEDLL 369 (391)
Q Consensus 295 ~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~r~----~~~~~RIg~~g~i~~~dv~ 369 (391)
T Consensus 378 ~~~~~--p~gG~flwl~l~~~~~-----------~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~ 443 (459)
T COG1167 378 ATWTR--PEGGLFLWLELPEGID-----------ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIE 443 (459)
T ss_pred EEEEC--CCCEEEEEEECCCCCC-----------HHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCC-CHHHHH
T ss_conf 37726--9955899998699888-----------899999999869979458866357898898289988989-999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780153|r 370 LLCDWLRWVFYFQ 382 (391)
Q Consensus 370 ~L~~aLe~~~~~~ 382 (391)
T Consensus 444 ~gi~~l~~~~~~~ 456 (459)
T COG1167 444 EGIKRLAALLREA 456 (459)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999976