HHsearch alignment for GI: 254780153 and conserved domain: COG1167

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].
Probab=98.39  E-value=0.00022  Score=47.30  Aligned_cols=327  Identities=15%  Similarity=0.077  Sum_probs=174.1

Q ss_pred             CCCCCCCCC-CC-CCCHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
Q ss_conf             998886888-77-68968999986321036--------532898899999999999999968899857999748734899
Q gi|254780153|r   11 PKRPFFSSG-PC-AKRPGWSLGILEGALLG--------RSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAV   80 (391)
Q Consensus        11 p~~~~F~pG-P~-~~~p~~v~~~~~~~~l~--------~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~   80 (391)
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al  168 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL  168 (459)
T ss_pred             CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHH
T ss_conf             75547688998810188899999999998505612332268768889999999999999749988830389806499999


Q ss_pred             HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCHHHCCC------CCCEEE-EEEECCCCEEE
Q ss_conf             98753205789707997073688888765323876306740-57776578676785------565799-74202420220
Q gi|254780153|r   81 EMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFT-APYGSLPDFSKVDF------DRDVVF-VWNGTTSGVCV  152 (391)
Q Consensus        81 ea~~~nl~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~------~~~v~~-~h~ETstGv~~  152 (391)
T Consensus       169 ~l~~~~l~~pGd~v~vE~PtY~~~-~~~~~~~g-~~~~~vp~d~~G~--~~e~le~~~~~~~~k~~y~~P~~qNPtG~tm  244 (459)
T COG1167         169 DLLLRLLLDPGDTVLVEDPTYPGA-LQALEALG-ARVIPVPVDEDGI--DPEALEEALAQWKPKAVYVTPTFQNPTGVTM  244 (459)
T ss_pred             HHHHHHHCCCCCEEEECCCCHHHH-HHHHHHCC-CCEEEECCCCCCC--CHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf             999998479999999899982899-99999869-9478606788898--9799999985069728997889638898745


Q ss_pred             CCEEE-----ECCCCCCEEEEEECCHHHHC---CCC-CCCC----EEEE-ECCHHCCCCCCCCEEEEECHHHHHHHHHCC
Q ss_conf             32035-----02568614886401101102---545-5685----7999-700120017665154456778887654114
Q gi|254780153|r  153 PDVGF-----IPESREGLVICDATSAVFAR---HID-FNKL----DVVT-FSAQKVLGGEAGFGIIILSPASVERLEKYV  218 (391)
Q Consensus       153 ~~~~~-----~~~~~~~llivD~vSs~g~~---p~d-~~~i----Dv~~-a~sQK~l~~ppGl~~v~~s~~al~~~~~~~  218 (391)
T Consensus       245 s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k  324 (459)
T COG1167         245 SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLK  324 (459)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHCCCCCEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             99999999999997598799867743321588998345762899978999132665146755499972999999999998


Q ss_pred             CCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             45778312320011232103347864466644889999999986201031----89999999977999999987479716
Q gi|254780153|r  219 PSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGG----LSACVERCNANAAVLFQFIQENDWIE  294 (391)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gG----l~~~~~r~~~~a~~l~~~i~~~~~~~  294 (391)
T Consensus       325 -----------------------~~~~~~~s~~~Q~~la~---~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~  377 (459)
T COG1167         325 -----------------------QAADLGPSSLSQAALAA---FLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPEL  377 (459)
T ss_pred             -----------------------HHHCCCCCHHHHHHHHH---HHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             -----------------------76256998999999999---997-285999999999999999999999999747876


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECC-CCCCC----CCCEEEEECCCCCCHHHHH
Q ss_conf             766882003653178982473101137345678889999988862828726-65567----6750568615888999999
Q gi|254780153|r  295 NLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDI-GSYRD----APLGLRVWVGVTVEKEDLL  369 (391)
Q Consensus       295 ~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~r~----~~~~~RIg~~g~i~~~dv~  369 (391)
T Consensus       378 ~~~~~--p~gG~flwl~l~~~~~-----------~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~  443 (459)
T COG1167         378 ATWTR--PEGGLFLWLELPEGID-----------ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIE  443 (459)
T ss_pred             EEEEC--CCCEEEEEEECCCCCC-----------HHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCC-CHHHHH
T ss_conf             37726--9955899998699888-----------899999999869979458866357898898289988989-999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780153|r  370 LLCDWLRWVFYFQ  382 (391)
Q Consensus       370 ~L~~aLe~~~~~~  382 (391)
T Consensus       444 ~gi~~l~~~~~~~  456 (459)
T COG1167         444 EGIKRLAALLREA  456 (459)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999976