HHsearch alignment for GI: 254780153 and conserved domain: COG1982
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=98.29 E-value=0.00024 Score=47.05 Aligned_cols=289 Identities=14% Similarity=0.116 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE-EECCHHHHHHHHHHHCCCCCEEEEEC---C-
Q ss_conf 999999999999688998579997487348999875320578970799-70736888887653238763067405---7-
Q gi|254780153|r 49 RINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVL-AWESFGLGWMSDIRQLSLQDVREFTA---P- 123 (391)
Q Consensus 49 i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~---~- 123 (391)
T Consensus 71 ~i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glila--G-a~Pvyl~p~~np~ 144 (557)
T COG1982 71 PIKEAQELAARVFGADHT---YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILA--G-ATPVYLEPSRNPL 144 (557)
T ss_pred CHHHHHHHHHHHHCCCCE---EEEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHC--C-CCEEEECCCCCCC
T ss_conf 388999999998688862---999778228999999860389998996587637888899874--8-8327841777854
Q ss_pred CCCC--CCHHHCCC------CC-CEEEEEEECCCCEEECCEEEE--CCCCCCEEEEEECCHHH--HCC----CCC-CCCE
Q ss_conf 7765--78676785------56-579974202420220320350--25686148864011011--025----455-6857
Q gi|254780153|r 124 YGSL--PDFSKVDF------DR-DVVFVWNGTTSGVCVPDVGFI--PESREGLVICDATSAVF--ARH----IDF-NKLD 185 (391)
Q Consensus 124 ~g~~--~~~~~~~~------~~-~v~~~h~ETstGv~~~~~~~~--~~~~~~llivD~vSs~g--~~p----~d~-~~iD 185 (391)
T Consensus 145 ~gi~ggI~~~~~~~al~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~ 224 (557)
T COG1982 145 YGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGAD 224 (557)
T ss_pred CCCCCCCCHHHHHHHHHHCHHHHHEEEEECCCCCEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCHHHHCCCE
T ss_conf 46537869899879998471304068896485324760599999997531866888645774335555574114545743
Q ss_pred EEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99970012001766515445677888765411445778312320011232103347864466644889999999986201
Q gi|254780153|r 186 VVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKK 265 (391)
Q Consensus 186 v~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~ 265 (391)
T Consensus 225 ~~tqS~HK~l~alSQaS~iHv~~~---------------~~~~~~r~nea~~~---h~--STSPsY~l~ASlD~Ar~~~~ 284 (557)
T COG1982 225 FVTQSTHKLLAALSQASMIHVKDG---------------RAVNHERFNEALMM---HQ--STSPSYPLMASLDVARMQEG 284 (557)
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCC---------------CCCCHHHHHHHHHH---HC--CCCCHHHHHHHHHHHHHHHH
T ss_conf 898105442123436678750887---------------65778999999998---80--67955899988999998754
Q ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------------CCCCEEEEEECCCCCCCCCHHHH
Q ss_conf 0318999---999997799999998747971676688200-----------------36531789824731011373456
Q gi|254780153|r 266 MGGLSAC---VERCNANAAVLFQFIQENDWIENLAVDETT-----------------RSNTSICMKIVDSDIASLDINSQ 325 (391)
Q Consensus 266 ~gGl~~~---~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~-----------------rS~~~v~~~~~d~~~~~~~~~~~ 325 (391)
T Consensus 285 ~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~----------~ 354 (557)
T COG1982 285 NAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPE----------F 354 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----------C
T ss_conf 334788888899999999999998876488640266555775332221223445420366079996577----------8
Q ss_pred HHHHHHHHHHHHHCCEEECC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 78889999988862828726-6556767505686158889999999999999
Q gi|254780153|r 326 KSFCKSMLSFLEKEEIAYDI-GSYRDAPLGLRVWVGVTVEKEDLLLLCDWLR 376 (391)
Q Consensus 326 ~~~~~~~~~~l~~~g~~~~~-~~~r~~~~~~RIg~~g~i~~~dv~~L~~aLe 376 (391)
T Consensus 355 Gipg~~v~~~L~e~gii~e~~~d~~~---lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 355 GIPGAIVAKYLREHGIIPEETGDYSN---LLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCEE---EEEEEECCCHHHHHHHHHHHHHH
T ss_conf 97399999999975881453177324---67863241067899999999987