HHsearch alignment for GI: 254780153 and conserved domain: PRK01278

>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=98.89  E-value=2.1e-06  Score=60.06  Aligned_cols=302  Identities=13%  Similarity=0.074  Sum_probs=155.2

Q ss_pred             CHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHC------CC-CC-CEE
Q ss_conf             9689999863210365328988999-999999999999688998579997487348999875320------57-89-707
Q gi|254780153|r   24 RPGWSLGILEGALLGRSHRCVLGKE-RINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSL------LG-YR-GVD   94 (391)
Q Consensus        24 ~p~~v~~~~~~~~l~~sHRs~~f~~-i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl------~~-~~-~~~   94 (391)
T Consensus        49 ~p~-i~~ai~~q~~~l~~~~~~~~~~~~~~la~~L~~~~--~~d-~v~f-~~sGsEAve~AlklAr~~~~~~g~t~r~~i  123 (389)
T PRK01278         49 HPH-LVEALKEQAEKLWHVSNLYRIPEQERLAERLVENS--FAD-KVFF-TNSGAEAVECAIKTARRYQYGKGHPERYRI  123 (389)
T ss_pred             CHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCC-EEEE-ECCHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             789-99999999865667656536879999999975336--768-7999-687489999999999998885399997289


Q ss_pred             EEEECCHHHHHHHHHHHCCCCCEE---------EEECCCCCCCCHHHCCC--CCCEEEEEEECCCC---EEECC------
Q ss_conf             997073688888765323876306---------74057776578676785--56579974202420---22032------
Q gi|254780153|r   95 VLAWESFGLGWMSDIRQLSLQDVR---------EFTAPYGSLPDFSKVDF--DRDVVFVWNGTTSG---VCVPD------  154 (391)
Q Consensus        95 ~~~~g~~~~r~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~--~~~v~~~h~ETstG---v~~~~------  154 (391)
T Consensus       124 i~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~---~~d~~~l~~~~~~~iAaviiEPi~g~gG~~~~~~~yl~~  200 (389)
T PRK01278        124 ITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVP---FGDIEALKAAITPNTAAILIEPIQGEGGIRPLPDEFLKG  200 (389)
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECC---CCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             99888888676351135788443366689988824677---897899998628881799996888888960699999999


Q ss_pred             EEEECCCCCCEEEEEECCHHHHCC---C--CCCCCEEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHH
Q ss_conf             035025686148864011011025---4--556857999700120017665--154456778887654114457783123
Q gi|254780153|r  155 VGFIPESREGLVICDATSAVFARH---I--DFNKLDVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIF  227 (391)
Q Consensus       155 ~~~~~~~~~~llivD~vSs~g~~p---~--d~~~iDv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~  227 (391)
T Consensus       201 l~~lc~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~gK~l~g--G~P~sav~~~~ei~~~~---~~--------  267 (389)
T PRK01278        201 LRQLCDENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPDIMALAKGIGG--GFPLGACLATEEAAKGM---TP--------  267 (389)
T ss_pred             HHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCC--CCCEEEEEECHHHHHHC---CC--------
T ss_conf             999998606538742100077755664220036768986787012468--87427998638878543---68--------


Q ss_pred             HCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCC
Q ss_conf             20011232103347864466644889999999986201031899999999779999999874797167-66882003653
Q gi|254780153|r  228 RMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIEN-LAVDETTRSNT  306 (391)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~-~~~~~~~rS~~  306 (391)
T Consensus       268 -----------g~~~~T~~gnp~-~~aaala~L~~i~~~~----l~~~v~~~G~~l~~~L~~l~~~~p~~i~~--vRG~G  329 (389)
T PRK01278        268 -----------GTHGSTYGGNPL-AMAVGNAVLDVVLAPG----FLDNVQKMGLYLKQKLESLVDRFPDVIEE--VRGEG  329 (389)
T ss_pred             -----------CCCCCCCCCCHH-HHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHCCCCEEE--EEEEE
T ss_conf             -----------876779997999-9999999999998646----99999999999999999998768671355--64503


Q ss_pred             EE-EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             17-8982473101137345678889999988862828726655676750568615888999999999999999999
Q gi|254780153|r  307 SI-CMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDLLLLCDWLRWVFYF  381 (391)
Q Consensus       307 ~v-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~~~~RIg~~g~i~~~dv~~L~~aLe~~~~~  381 (391)
T Consensus       330 l~~gie~~~~-------------~~~i~~~~~~~Gll~~~~g----~~~lr~~PpL~it~~ei~~~~~~l~~al~~  388 (389)
T PRK01278        330 LMLGLKCVVP-------------SRDLVAALRDEGLLTVPAG----DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             EEEEEEECCC-------------HHHHHHHHHHCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6999994588-------------9999999997993897279----997999788139899999999999999975