HHsearch alignment for GI: 254780153 and conserved domain: PRK09331

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.42  E-value=1.6e-10  Score=86.21  Aligned_cols=294  Identities=11%  Similarity=0.044  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEEEC----CC
Q ss_conf             999999999996889985799974873489998753205789707997-0736888887653238763067405----77
Q gi|254780153|r   50 INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREFTA----PY  124 (391)
Q Consensus        50 ~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~~~----~~  124 (391)
T Consensus        64 i~~f~~~la~flg~D----~~rlvnGar~g~qAv~~a~c~~GD~VIl~rnaHyS~~~A~ela---G~~~~~v~~~~~~~~  136 (386)
T PRK09331         64 IADFHEDLAKFLGMD----EARVTPGAREGKFAVMHALCKKGDYVVLDGLAHYTSYVAAERA---GLNVREVPKTGYPDY  136 (386)
T ss_pred             HHHHHHHHHHHHCCC----EEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC---CCEEEEECCCCCCCC
T ss_conf             899999999984996----3785288427899999986369997984484059999999975---985899368777234


Q ss_pred             CCCCC--HHHC-------CCCCCE-EEEEEECCCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEEC
Q ss_conf             76578--6767-------855657-997420242022032035--0256861488640110110254556--85799970
Q gi|254780153|r  125 GSLPD--FSKV-------DFDRDV-VFVWNGTTSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFS  190 (391)
Q Consensus       125 g~~~~--~~~~-------~~~~~v-~~~h~ETstGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~  190 (391)
T Consensus       137 ~I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy~yGn~~d~~~i~~iah~~~ip~lvdeA~~~~~~P~~a~~~GaD~~v~S  216 (386)
T PRK09331        137 RITPEAYAEKIEEVEDETGKPPALALLTHVDGNYGNLHDAKKIAKVAHQYGIPLLLNGAYTVGRMPVDGKELGADFIVGS  216 (386)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHCCCCEEEEE
T ss_conf             50800579999999986189855999968886644546389999999874981898144335778974666399889863


Q ss_pred             CHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf             01200176651544567788876541144577831232001123210334786446-66448899999999862010318
Q gi|254780153|r  191 AQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETIN-TPSLLCIEDYIDALLWLKKMGGL  269 (391)
Q Consensus       191 sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-TP~v~~i~al~~~l~~i~~~gGl  269 (391)
T Consensus       217 ~HK~~~s~t~sgvL~~~~e~~d~v~R~s~~~-~~Kev-----------~mLgcTs~g~psy~LMASfd~vrerv------  278 (386)
T PRK09331        217 GHKSMAASAPSGVLATTEEYADKVFRTSKKF-GVKEV-----------ELLGCTLRGAPLVTLMASFPHVKERV------  278 (386)
T ss_pred             CCCCCCCCCCCEEEECCCCHHHHHHHCCCCC-HHHHH-----------HHHCCCCCCCHHHHHHHCCHHHHHHH------
T ss_conf             4544423463124430453015565226430-57899-----------88536334640899980659999999------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCC
Q ss_conf             99999999779999999874797167668820036531789824731011373456788899999888628287266556
Q gi|254780153|r  270 SACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYR  349 (391)
Q Consensus       270 ~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r  349 (391)
T Consensus       279 -~~~d~ev~~ar~~~~El~kIeG~~~lge~P~--~hdl~~f--dtt~~~~ia~~~~~~G-y~l~~~Lk~r~I~ge~sg--  350 (386)
T PRK09331        279 -KNWDEEVEKARWFVDELEKIEGFKQLGEKPR--NHDLMRF--ETPSFDEIAKKHKRRG-FFLYEELKKRGIHGIKPG--  350 (386)
T ss_pred             -HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEE--CCCCEEEEHHHCCCCC-EEHHHHHHHCCCEEEECC--
T ss_conf             -8778999999999999860876554065778--7774353--3764122232048660-567999976796499557--


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             76750568615888999999999999999
Q gi|254780153|r  350 DAPLGLRVWVGVTVEKEDLLLLCDWLRWV  378 (391)
Q Consensus       350 ~~~~~~RIg~~g~i~~~dv~~L~~aLe~~  378 (391)
T Consensus       351 -~t~~lkl~s~G~-t~E~v~~li~A~keI  377 (386)
T PRK09331        351 -LTKEFKLSTYGL-TWEQVEYVADSFKEI  377 (386)
T ss_pred             -CCEEEEEEECCC-CHHHHHHHHHHHHHH
T ss_conf             -101787886178-789999999999999