HHsearch alignment for GI: 254780153 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.42 E-value=1.6e-10 Score=86.21 Aligned_cols=294 Identities=11% Similarity=0.044 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEEEC----CC
Q ss_conf 999999999996889985799974873489998753205789707997-0736888887653238763067405----77
Q gi|254780153|r 50 INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREFTA----PY 124 (391)
Q Consensus 50 ~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~~~----~~ 124 (391)
T Consensus 64 i~~f~~~la~flg~D----~~rlvnGar~g~qAv~~a~c~~GD~VIl~rnaHyS~~~A~ela---G~~~~~v~~~~~~~~ 136 (386)
T PRK09331 64 IADFHEDLAKFLGMD----EARVTPGAREGKFAVMHALCKKGDYVVLDGLAHYTSYVAAERA---GLNVREVPKTGYPDY 136 (386)
T ss_pred HHHHHHHHHHHHCCC----EEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC---CCEEEEECCCCCCCC
T ss_conf 899999999984996----3785288427899999986369997984484059999999975---985899368777234
Q ss_pred CCCCC--HHHC-------CCCCCE-EEEEEECCCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEEC
Q ss_conf 76578--6767-------855657-997420242022032035--0256861488640110110254556--85799970
Q gi|254780153|r 125 GSLPD--FSKV-------DFDRDV-VFVWNGTTSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFS 190 (391)
Q Consensus 125 g~~~~--~~~~-------~~~~~v-~~~h~ETstGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~ 190 (391)
T Consensus 137 ~I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy~yGn~~d~~~i~~iah~~~ip~lvdeA~~~~~~P~~a~~~GaD~~v~S 216 (386)
T PRK09331 137 RITPEAYAEKIEEVEDETGKPPALALLTHVDGNYGNLHDAKKIAKVAHQYGIPLLLNGAYTVGRMPVDGKELGADFIVGS 216 (386)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHCCCCEEEEE
T ss_conf 50800579999999986189855999968886644546389999999874981898144335778974666399889863
Q ss_pred CHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 01200176651544567788876541144577831232001123210334786446-66448899999999862010318
Q gi|254780153|r 191 AQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETIN-TPSLLCIEDYIDALLWLKKMGGL 269 (391)
Q Consensus 191 sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-TP~v~~i~al~~~l~~i~~~gGl 269 (391)
T Consensus 217 ~HK~~~s~t~sgvL~~~~e~~d~v~R~s~~~-~~Kev-----------~mLgcTs~g~psy~LMASfd~vrerv------ 278 (386)
T PRK09331 217 GHKSMAASAPSGVLATTEEYADKVFRTSKKF-GVKEV-----------ELLGCTLRGAPLVTLMASFPHVKERV------ 278 (386)
T ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHCCCCC-HHHHH-----------HHHCCCCCCCHHHHHHHCCHHHHHHH------
T ss_conf 4544423463124430453015565226430-57899-----------88536334640899980659999999------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCC
Q ss_conf 99999999779999999874797167668820036531789824731011373456788899999888628287266556
Q gi|254780153|r 270 SACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYR 349 (391)
Q Consensus 270 ~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r 349 (391)
T Consensus 279 -~~~d~ev~~ar~~~~El~kIeG~~~lge~P~--~hdl~~f--dtt~~~~ia~~~~~~G-y~l~~~Lk~r~I~ge~sg-- 350 (386)
T PRK09331 279 -KNWDEEVEKARWFVDELEKIEGFKQLGEKPR--NHDLMRF--ETPSFDEIAKKHKRRG-FFLYEELKKRGIHGIKPG-- 350 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEE--CCCCEEEEHHHCCCCC-EEHHHHHHHCCCEEEECC--
T ss_conf -8778999999999999860876554065778--7774353--3764122232048660-567999976796499557--
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 76750568615888999999999999999
Q gi|254780153|r 350 DAPLGLRVWVGVTVEKEDLLLLCDWLRWV 378 (391)
Q Consensus 350 ~~~~~~RIg~~g~i~~~dv~~L~~aLe~~ 378 (391)
T Consensus 351 -~t~~lkl~s~G~-t~E~v~~li~A~keI 377 (386)
T PRK09331 351 -LTKEFKLSTYGL-TWEQVEYVADSFKEI 377 (386)
T ss_pred -CCEEEEEEECCC-CHHHHHHHHHHHHHH
T ss_conf -101787886178-789999999999999