HHsearch alignment for GI: 254780153 and conserved domain: PRK13355
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional.
Probab=97.30 E-value=0.015 Score=35.62 Aligned_cols=279 Identities=15% Similarity=0.127 Sum_probs=141.5
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEE-ECCCCCCCCHHHCCC-----CCCEEE
Q ss_conf 79997487348999875320578970799707368888876532387630674-057776578676785-----565799
Q gi|254780153|r 68 RIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREF-TAPYGSLPDFSKVDF-----DRDVVF 141 (391)
Q Consensus 68 ~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-----~~~v~~ 141 (391)
T Consensus 210 di~~-gnGvSE~i~~am~Alln~GDeVLiP~P~YPl-yta~v~L~Gg~pV~y~~dEe~~w~PDiedLe~kIT~kTKAIVI 287 (518)
T PRK13355 210 DIYT-GNGVSELINLSMSALLDDGDEVLVPSPDYPL-WTACVNLAGGTAVHYRCDEESEWYPDIDDIRSKITSKTKAIVI 287 (518)
T ss_pred HEEE-CCCHHHHHHHHHHHHCCCCCEEEECCCCCCC-HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEE
T ss_conf 3565-4776799999999836899989825999977-8999886098788987452217788999998535715579999
Q ss_pred EEEECCCCEEECCEE-----EECCCCCCEEEEEECCHHHHC----CCCC-----CCCEEEEECCHHCCCCCCCCEEE--E
Q ss_conf 742024202203203-----502568614886401101102----5455-----68579997001200176651544--5
Q gi|254780153|r 142 VWNGTTSGVCVPDVG-----FIPESREGLVICDATSAVFAR----HIDF-----NKLDVVTFSAQKVLGGEAGFGII--I 205 (391)
Q Consensus 142 ~h~ETstGv~~~~~~-----~~~~~~~~llivD~vSs~g~~----p~d~-----~~iDv~~a~sQK~l~~ppGl~~v--~ 205 (391)
T Consensus 288 nNPNNPTGAVyS~E~LeeIaeiArehdLiIISDEIY~~LvYDg~~h~Siasla~d~~~It~NG~SKsya-MtGWRiGwmv 366 (518)
T PRK13355 288 INPNNPTGALYPKEVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHM-IAGFRAGWMM 366 (518)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCEE-CCEEEEEEEE
T ss_conf 689898887889999999999999859699962302210068986304767088645999887766633-2201136654
Q ss_pred ECH-HHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 677-8887654114457783123200112321033478644666448899999999862010318999999997799999
Q gi|254780153|r 206 LSP-ASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLF 284 (391)
Q Consensus 206 ~s~-~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~ 284 (391)
T Consensus 367 ~sG~~~~a~-----------~~Ie~---l~~L-----as~~lcsnvpaQ~A~~aAL~g~qs~~d~~~~~~rl~erRdlv~ 427 (518)
T PRK13355 367 LSGNKRHAK-----------DYIEG---LNML-----ANMRMCSNVPAQSVVQTALGGHQSVKDYTVPGGRLYDQRELVY 427 (518)
T ss_pred ECCCHHHHH-----------HHHHH---HHHH-----HHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 248589999-----------99999---9998-----6045663689999999986287648999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC--CCCCCCEEEEECCCC
Q ss_conf 998747971676688200365317898247310113734567888999998886282872665--567675056861588
Q gi|254780153|r 285 QFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS--YRDAPLGLRVWVGVT 362 (391)
Q Consensus 285 ~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~r~~~~~~RIg~~g~ 362 (391)
T Consensus 428 e~Ln~IpGvscvkP~GAF-----YlFPkID~~~--~~i~dDeeFa---l~LL~Ee~VlVVPGsaFG~~~pghfRIsyap- 496 (518)
T PRK13355 428 DMLNAIPGISAVKPKAAF-----YIFPKIDVKI--FNIHSDEQFA---LDLLHEKHILISHGGAFNWDKPDHFRVVYLP- 496 (518)
T ss_pred HHHHCCCCCEECCCCEEE-----EEEEECCCCC--CCCCCHHHHH---HHHHHHCCEEEECCCCCCCCCCCEEEEEECC-
T ss_conf 998359997658998158-----9955415344--8998999999---9999858999958754489998979999279-
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999
Q gi|254780153|r 363 VEKEDLLLLCDWLRWVFY 380 (391)
Q Consensus 363 i~~~dv~~L~~aLe~~~~ 380 (391)
T Consensus 497 -s~e~L~EA~~RI~~FL~ 513 (518)
T PRK13355 497 -RLGMLEETMDELDDFFS 513 (518)
T ss_pred -CHHHHHHHHHHHHHHHH
T ss_conf -99999999999999999