HHsearch alignment for GI: 254780153 and conserved domain: PRK13578
>PRK13578 ornithine decarboxylase; Provisional.
Probab=97.78 E-value=0.0035 Score=39.66 Aligned_cols=302 Identities=11% Similarity=0.012 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE-EECCHHHHHHHHHHHCCCCCEEEEE---CCC
Q ss_conf 999999999999688998579997487348999875320578970799-7073688888765323876306740---577
Q gi|254780153|r 49 RINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVL-AWESFGLGWMSDIRQLSLQDVREFT---APY 124 (391)
Q Consensus 49 i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~---~~~ 124 (391)
T Consensus 175 ~~~eAq~~AA~~FGAD~---TyFvvNGTS~~nk~v~~a~~~pGD~VLvdRN~HKSv~~G--ALIlsGA~PVYl~p~rN~~ 249 (720)
T PRK13578 175 AAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG--ALIQAGATPVYLETARNPF 249 (720)
T ss_pred CHHHHHHHHHHHHCCCE---EEEEECCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHH--HHHHCCCEEEEECCCCCCC
T ss_conf 44799999999849982---699957710889999997458999999656435777778--8986697679966646756
Q ss_pred CCC--CCH-----H----HC--------CC--CCCEEEEEEECCCCEEECCEEEE---CCCCCCEEEEEECCHHHH---C
Q ss_conf 765--786-----7----67--------85--56579974202420220320350---256861488640110110---2
Q gi|254780153|r 125 GSL--PDF-----S----KV--------DF--DRDVVFVWNGTTSGVCVPDVGFI---PESREGLVICDATSAVFA---R 177 (391)
Q Consensus 125 g~~--~~~-----~----~~--------~~--~~~v~~~h~ETstGv~~~~~~~~---~~~~~~llivD~vSs~g~---~ 177 (391)
T Consensus 250 GiiggI~~~~f~~~~i~~~I~~~~~~~a~~~~p~~~aVit~~TYdGi~yn~~~I~~~i~~~~~-~ilfDEAw-~~~~~F~ 327 (720)
T PRK13578 250 GFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAIIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAW-VGYEQFI 327 (720)
T ss_pred CEECCCCHHHCCHHHHHHHHHHHCHHHHCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHCC-EEEEECCH-HHHHHCC
T ss_conf 511674857527577898887436333123488618999468753542349999999864078-38985110-2144328
Q ss_pred CC-----------CCCCCE-EEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCC
Q ss_conf 54-----------556857-999700120017665154456778887654114457783123200112321033478644
Q gi|254780153|r 178 HI-----------DFNKLD-VVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETI 245 (391)
Q Consensus 178 p~-----------d~~~iD-v~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (391)
T Consensus 328 P~~~d~~p~~l~~gaddp~i~vtQStHK~LaafSQaS~IHvkd~hI------~g~---~r~v~~~rfn~a~mm---h~-- 393 (720)
T PRK13578 328 PMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHI------KGQ---ARYCPHKRFNNAFML---HA-- 393 (720)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCHHHEEEECCCCC------CCC---CCCCCHHHHHHHHHH---HC--
T ss_conf 5311246433345877765046630655544322221012245434------666---566788999999987---70--
Q ss_pred CCCCHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCC------------------------
Q ss_conf 666448899-99999986201031899999999779999999874-7971676688------------------------
Q gi|254780153|r 246 NTPSLLCIE-DYIDALLWLKKMGGLSACVERCNANAAVLFQFIQE-NDWIENLAVD------------------------ 299 (391)
Q Consensus 246 ~TP~v~~i~-al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~-~~~~~~~~~~------------------------ 299 (391)
T Consensus 394 STSPsY~L~ASLDv~A~m~~g~~G~-~L~~e~i~~aie~Rk~il~~~~~~k~~~p~~v~g~~~~~~~~e~l~~d~~~w~~ 472 (720)
T PRK13578 394 STSPFYPLFAALDVNAKMHEGESGR-RLWMDCVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSF 472 (720)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC
T ss_conf 7880899999879999997312145-899999999999999998654442255752126860354888886125010246
Q ss_pred ---C------------CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCC
Q ss_conf ---2------------0036531789824731011373456788899999888628287266556767505686158889
Q gi|254780153|r 300 ---E------------TTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVE 364 (391)
Q Consensus 300 ---~------------~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~~~~RIg~~g~i~ 364 (391)
T Consensus 473 ~Pg~~WHGf~g~~~~~~~lDP~Klti~tPGi~~~~g~~~~~GIpA~il~~yLre~gIvvEktdl~~IL--fL~T~G--~t 548 (720)
T PRK13578 473 EPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGVPATILANYLRENGIVPEKCDLNSIL--FLLTPA--ED 548 (720)
T ss_pred CCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEEE--EEECCC--CC
T ss_conf 88742246555576634226737998536745566542136875899999998769079854775079--997267--88
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780153|r 365 KEDLLLLCDWLR 376 (391)
Q Consensus 365 ~~dv~~L~~aLe 376 (391)
T Consensus 549 ~~k~~~Lv~aL~ 560 (720)
T PRK13578 549 MAKLQQLVAMLA 560 (720)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999