HHsearch alignment for GI: 254780153 and conserved domain: TIGR00474

>TIGR00474 selA L-seryl-tRNA selenium transferase; InterPro: IPR004534 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homolog of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N-terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pyloriputative SelA.; GO: 0004125 L-seryl-tRNASec selenium transferase activity, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=96.63  E-value=0.057  Score=31.91  Aligned_cols=300  Identities=15%  Similarity=0.075  Sum_probs=143.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECC-----HHHHHHHHHHH
Q ss_conf             3653289889999999999999996889985799974873489998753205789707997073-----68888876532
Q gi|254780153|r   37 LGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWES-----FGLGWMSDIRQ  111 (391)
Q Consensus        37 l~~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g~-----~~~r~~~~~~~  111 (391)
T Consensus       104 ~gRG~R~~~i~~lLc~lT-------gae-~~cvvn-N-na~avlL~l~--~~a~GKeVi~srGEL~eiGg~fRipdim~~  171 (448)
T TIGR00474       104 GGRGHRDAHIEKLLCKLT-------GAE-DACVVN-N-NAAAVLLMLA--TLAKGKEVIISRGELVEIGGAFRIPDIMKQ  171 (448)
T ss_pred             CCCCHHHHHHHHHHHHHC-------CCC-CCEEEE-C-HHHHHHHHHH--HHCCCCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             575317899999987532-------862-330442-3-3899999999--960798799978865789875654488965


Q ss_pred             CCCCCEEEEE-CCCCCCCC-HHHCCCCCCEEE-EEEE--CCCCEEEC--CEE--EECCCCCCEEEEEECCHHH------H
Q ss_conf             3876306740-57776578-676785565799-7420--24202203--203--5025686148864011011------0
Q gi|254780153|r  112 LSLQDVREFT-APYGSLPD-FSKVDFDRDVVF-VWNG--TTSGVCVP--DVG--FIPESREGLVICDATSAVF------A  176 (391)
Q Consensus       112 ~~~~~~~~~~-~~~g~~~~-~~~~~~~~~v~~-~h~E--TstGv~~~--~~~--~~~~~~~~llivD~vSs~g------~  176 (391)
T Consensus       172 ~g-~~l~eVGttn~t~~~Dy~~ai~~nTa~Lmkvh~sNf~~~gft~~~~eeeLv~LG~~~~~pv~~D~gSG~LvdL~~~g  250 (448)
T TIGR00474       172 AG-CELDEVGTTNRTHVKDYRVAITENTALLMKVHLSNFKIVGFTAKVKEEELVKLGKELDVPVVTDLGSGLLVDLSQYG  250 (448)
T ss_pred             CC-CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCC
T ss_conf             38-56510110120004467776531034444443016625652111577899973223377079987766212254416


Q ss_pred             CCCC--------CCCCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCC
Q ss_conf             2545--------56857999700120017665154456778887654114457783123200112321033478644666
Q gi|254780153|r  177 RHID--------FNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTP  248 (391)
Q Consensus       177 ~p~d--------~~~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP  248 (391)
T Consensus       251 L~~~eP~~~~~i~~G~dLVs~SgDKLLgGp-qaGiivGKKeli~ki~~~p~k----r~Lr~dk-----------------  308 (448)
T TIGR00474       251 LPKNEPNVQEAIALGVDLVSFSGDKLLGGP-QAGIIVGKKELIEKIQIHPLK----RALRADK-----------------  308 (448)
T ss_pred             CCCCCCCCCHHHHCCCCEEECCCCCCCCCC-CCCEEECCHHHHHHHHHCCCC----EEHHCCH-----------------
T ss_conf             666889710688669857861651004676-503462307899998547862----2101241-----------------


Q ss_pred             CHHHHHHHHHHHHHHHCC----CCH------HHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             448899999999862010----318------99999999779999999874797--167668820036531789824731
Q gi|254780153|r  249 SLLCIEDYIDALLWLKKM----GGL------SACVERCNANAAVLFQFIQENDW--IENLAVDETTRSNTSICMKIVDSD  316 (391)
Q Consensus       249 ~v~~i~al~~~l~~i~~~----gGl------~~~~~r~~~~a~~l~~~i~~~~~--~~~~~~~~~~rS~~~v~~~~~d~~  316 (391)
T Consensus       309 ~--~LAGle~tLkly~~PEkl~E~ip~lr~ltr~~~~~~~~a~rL~~~L~~~~~~~f~i~i~~~~~~~G~gs~p~~~~pt  386 (448)
T TIGR00474       309 L--TLAGLEATLKLYLNPEKLLEKIPTLRLLTRAKKFLRIKAERLEKELKAIDGAEFNIQIVKERAQIGSGSLPVERLPT  386 (448)
T ss_pred             H--HHHHHHHHHHHHCCHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             6--79999999974158024304421556530348899999999888750356882268886205788974365322663


Q ss_pred             CCCCCHHHHH--HHHHHHHHHHHHCCE-EECCCCCCCCCCEEEEE-CCCCCCHHHHHHHHHHHH
Q ss_conf             0113734567--888999998886282-87266556767505686-158889999999999999
Q gi|254780153|r  317 IASLDINSQK--SFCKSMLSFLEKEEI-AYDIGSYRDAPLGLRVW-VGVTVEKEDLLLLCDWLR  376 (391)
Q Consensus       317 ~~~~~~~~~~--~~~~~~~~~l~~~g~-~~~~~~~r~~~~~~RIg-~~g~i~~~dv~~L~~aLe  376 (391)
T Consensus       387 ~~v~~~~~~~~G~~l~~L~~r~~~~~~pv~Gr---PGa~~~~rl~Ld~R~~~~~D~~~i~~~l~  447 (448)
T TIGR00474       387 IAVTILIEIGSGAKLENLSARYRILTIPVIGR---PGAIKSGRLWLDLRDLERIDDNTILKTLV  447 (448)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             23111111067512799998618567774407---77761242113256788887999999833