HHsearch alignment for GI: 254780153 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=98.06 E-value=3.1e-05 Score=52.69 Aligned_cols=209 Identities=23% Similarity=0.273 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHH--HHHHHHHCCCCCEEEE
Q ss_conf 98899999999999999968899857999748734899987532057897079970736888--8876532387630674
Q gi|254780153|r 43 CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLG--WMSDIRQLSLQDVREF 120 (391)
Q Consensus 43 s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g~~~~r--~~~~~~~~~~~~~~~~ 120 (391)
T Consensus 57 gNPTv~~LE------~riA~LE-g~EAavAt~SGMgAi~A~l~~~lkAgDh~i~d~~lYGCTfall~~~ltkfgi~v~f~ 129 (392)
T TIGR01328 57 GNPTVDLLE------RRIAELE-GAEAAVATASGMGAIAATLLSLLKAGDHVISDETLYGCTFALLEDALTKFGIDVKFV 129 (392)
T ss_pred CCCHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 771377888------8987542-046778875128999999999985287577438742014899873267737527983
Q ss_pred ECCCCCCCCHHHC--CCCCCEEEEEEECCCCEEECCEEE--------ECCCCC-CEEEEEECCH--HHHCCCCCCCCEEE
Q ss_conf 0577765786767--855657997420242022032035--------025686-1488640110--11025455685799
Q gi|254780153|r 121 TAPYGSLPDFSKV--DFDRDVVFVWNGTTSGVCVPDVGF--------IPESRE-GLVICDATSA--VFARHIDFNKLDVV 187 (391)
Q Consensus 121 ~~~~g~~~~~~~~--~~~~~v~~~h~ETstGv~~~~~~~--------~~~~~~-~llivD~vSs--~g~~p~d~~~iDv~ 187 (391)
T Consensus 130 ~~~-----~pee~~a~i~dnT~ivYfETP---aNPtm~liD~e~v~r~A~~~gG~kVivDNTfatP~lt~P~al-G~D~V 200 (392)
T TIGR01328 130 DMA-----SPEEVKAAIKDNTKIVYFETP---ANPTMKLIDLELVVRVAHEKGGVKVIVDNTFATPYLTRPVAL-GVDVV 200 (392)
T ss_pred CCC-----CHHHHHHHCCCCCEEEEEECC---CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHC-CCCEE
T ss_conf 178-----779999844899779998659---987525775999999997529828998566277001380361-87768
Q ss_pred EECCHHCCCCCCCC--EEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 97001200176651--5445677888765411445778312320011232103347864466644889999999986201
Q gi|254780153|r 188 TFSAQKVLGGEAGF--GIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKK 265 (391)
Q Consensus 188 ~a~sQK~l~~ppGl--~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~ 265 (391)
T Consensus 201 VHSATKYigGHgDvVaG~~~G~~e~~q~iR~~g~K-------D~-----------tG~------ViSPfdAwL~lRGLk- 255 (392)
T TIGR01328 201 VHSATKYIGGHGDVVAGVLIGDAELLQRIRLVGVK-------DM-----------TGA------VISPFDAWLVLRGLK- 255 (392)
T ss_pred EECCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCC-------CC-----------CCC------EECHHHHHHHHHHHH-
T ss_conf 94241213761221122110775667440111100-------05-----------665------005578999974366-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 03189999999977999999987479716
Q gi|254780153|r 266 MGGLSACVERCNANAAVLFQFIQENDWIE 294 (391)
Q Consensus 266 ~gGl~~~~~r~~~~a~~l~~~i~~~~~~~ 294 (391)
T Consensus 256 --TL~~RM~rhsenA~kvAe~Lk~HPaVe 282 (392)
T TIGR01328 256 --TLAVRMKRHSENAEKVAEYLKEHPAVE 282 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf --777888773053899999852388602