HHsearch alignment for GI: 254780153 and conserved domain: TIGR03235

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.92  E-value=1.2e-22  Score=163.29  Aligned_cols=297  Identities=15%  Similarity=0.126  Sum_probs=206.6

Q ss_pred             CCCCHHHHHHHHHHHCCC---C----CCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC----
Q ss_conf             768968999986321036---5----328-9889999999999999996889985799974873489998753205----
Q gi|254780153|r   21 CAKRPGWSLGILEGALLG---R----SHR-CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL----   88 (391)
Q Consensus        21 ~~~~p~~v~~~~~~~~l~---~----sHR-s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~----   88 (391)
T Consensus         8 tp~~~~-v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~-eiiF-Tsg~Tes~nl~i~g~~~~~~   84 (354)
T TIGR03235         8 TPVDPE-VAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTK-EVIF-TSGATESNNIAILGLARAHE   84 (354)
T ss_pred             CCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEE-ECCHHHHHHHHHHHHHHHHH
T ss_conf             989999-99999999986687973031289999999999999999998099967-7899-68837999999999998502


Q ss_pred             CCCCEEEEEECCH-HH-HHHHHHHHCCCCCEEEEECCCCCCCCHHHCC-----CCCCEEEEEEECCCCEEECCEEE--EC
Q ss_conf             7897079970736-88-8887653238763067405777657867678-----55657997420242022032035--02
Q gi|254780153|r   89 GYRGVDVLAWESF-GL-GWMSDIRQLSLQDVREFTAPYGSLPDFSKVD-----FDRDVVFVWNGTTSGVCVPDVGF--IP  159 (391)
Q Consensus        89 ~~~~~~~~~~g~~-~~-r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~v~~~h~ETstGv~~~~~~~--~~  159 (391)
T Consensus        85 ~~g~~ii~s~~EH~svl~~~~~l~~~-G~~v~~~~vd~~G~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi~~i~~~~  163 (354)
T TIGR03235        85 NKGKHIITTAIEHPAILEPARALERN-GFTVTYLEVDESGRVSVEELADAIRDDTLLVSIMHVNNETGSLQPIREIAELC  163 (354)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             69999998100304479999999964-96899955578982877999987268977999988756667638899998865


Q ss_pred             CCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHC
Q ss_conf             56861488640110110254556--8579997001200176651544567788876541144577831232001123210
Q gi|254780153|r  160 ESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVME  237 (391)
Q Consensus       160 ~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (391)
T Consensus       164 ~~~g~~~~vDa~Q~~g~~~id~~~~~~D~~s~S~HK-~~GP~GiG~L~vr~~~~~~~~-l~-----Pl~~--------GG  228 (354)
T TIGR03235       164 EAREVFFHSDAAQVVGKITVDLERDHIDLISLSGHK-AYGPKGIGALYIRKRGKPKAP-LA-----PIMF--------GG  228 (354)
T ss_pred             HCCCCEEEEECHHCCCCCCCCHHHHCCCEEEEECCC-CCCCCCEEEEEEECCCCCCCC-CC-----CEEC--------CC
T ss_conf             225641562500115875557788499737631000-348871499998046676666-46-----4036--------89


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             3347864466644889999999986201031899999999779999999874-797167668820036531789824731
Q gi|254780153|r  238 GLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQE-NDWIENLAVDETTRSNTSICMKIVDSD  316 (391)
Q Consensus       238 ~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~-~~~~~~~~~~~~~rS~~~v~~~~~d~~  316 (391)
T Consensus       229 gqe~g~r~GT~nv~~i~g~~~A~~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~v~i-~g~~~~r~p~i~s~~~~gi~  305 (354)
T TIGR03235       229 GQERGLRPGTLPVPLIVGMGEAAEIARR--NAQAWGVRLRAMCNLLRDALQTSLPGVKL-NGDPAETLPNILSFSFEGVN  305 (354)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCCCCCCEEEEEECCCC
T ss_conf             8868746899659999999999999998--28999999999999999999745996596-58822475888999979969


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
Q ss_conf             011373456788899999888628287266556767
Q gi|254780153|r  317 IASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAP  352 (391)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~  352 (391)
T Consensus       306 ~------------~~l~~~L-~~~iavstGSACssg  328 (354)
T TIGR03235       306 P------------EALIRNL-KADAAVSTGSACTSS  328 (354)
T ss_pred             H------------HHHHHHH-CCCCEEEHHHHCCCC
T ss_conf             9------------9999986-399899822420699