HHsearch alignment for GI: 254780153 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.92 E-value=1.2e-22 Score=163.29 Aligned_cols=297 Identities=15% Similarity=0.126 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHHHHCCC---C----CCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC----
Q ss_conf 768968999986321036---5----328-9889999999999999996889985799974873489998753205----
Q gi|254780153|r 21 CAKRPGWSLGILEGALLG---R----SHR-CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL---- 88 (391)
Q Consensus 21 ~~~~p~~v~~~~~~~~l~---~----sHR-s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~---- 88 (391)
T Consensus 8 tp~~~~-v~~~~~~~~~~~~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~-eiiF-Tsg~Tes~nl~i~g~~~~~~ 84 (354)
T TIGR03235 8 TPVDPE-VAEVMLPFLLEEFGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTK-EVIF-TSGATESNNIAILGLARAHE 84 (354)
T ss_pred CCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEE-ECCHHHHHHHHHHHHHHHHH
T ss_conf 989999-99999999986687973031289999999999999999998099967-7899-68837999999999998502
Q ss_pred CCCCEEEEEECCH-HH-HHHHHHHHCCCCCEEEEECCCCCCCCHHHCC-----CCCCEEEEEEECCCCEEECCEEE--EC
Q ss_conf 7897079970736-88-8887653238763067405777657867678-----55657997420242022032035--02
Q gi|254780153|r 89 GYRGVDVLAWESF-GL-GWMSDIRQLSLQDVREFTAPYGSLPDFSKVD-----FDRDVVFVWNGTTSGVCVPDVGF--IP 159 (391)
Q Consensus 89 ~~~~~~~~~~g~~-~~-r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~v~~~h~ETstGv~~~~~~~--~~ 159 (391)
T Consensus 85 ~~g~~ii~s~~EH~svl~~~~~l~~~-G~~v~~~~vd~~G~id~~~l~~~l~~~t~lvsi~~~nnetG~i~pi~~i~~~~ 163 (354)
T TIGR03235 85 NKGKHIITTAIEHPAILEPARALERN-GFTVTYLEVDESGRVSVEELADAIRDDTLLVSIMHVNNETGSLQPIREIAELC 163 (354)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 69999998100304479999999964-96899955578982877999987268977999988756667638899998865
Q ss_pred CCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHC
Q ss_conf 56861488640110110254556--8579997001200176651544567788876541144577831232001123210
Q gi|254780153|r 160 ESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVME 237 (391)
Q Consensus 160 ~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
T Consensus 164 ~~~g~~~~vDa~Q~~g~~~id~~~~~~D~~s~S~HK-~~GP~GiG~L~vr~~~~~~~~-l~-----Pl~~--------GG 228 (354)
T TIGR03235 164 EAREVFFHSDAAQVVGKITVDLERDHIDLISLSGHK-AYGPKGIGALYIRKRGKPKAP-LA-----PIMF--------GG 228 (354)
T ss_pred HCCCCEEEEECHHCCCCCCCCHHHHCCCEEEEECCC-CCCCCCEEEEEEECCCCCCCC-CC-----CEEC--------CC
T ss_conf 225641562500115875557788499737631000-348871499998046676666-46-----4036--------89
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 3347864466644889999999986201031899999999779999999874-797167668820036531789824731
Q gi|254780153|r 238 GLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQE-NDWIENLAVDETTRSNTSICMKIVDSD 316 (391)
Q Consensus 238 ~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~-~~~~~~~~~~~~~rS~~~v~~~~~d~~ 316 (391)
T Consensus 229 gqe~g~r~GT~nv~~i~g~~~A~~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~v~i-~g~~~~r~p~i~s~~~~gi~ 305 (354)
T TIGR03235 229 GQERGLRPGTLPVPLIVGMGEAAEIARR--NAQAWGVRLRAMCNLLRDALQTSLPGVKL-NGDPAETLPNILSFSFEGVN 305 (354)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCCCCCCEEEEEECCCC
T ss_conf 8868746899659999999999999998--28999999999999999999745996596-58822475888999979969
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
Q ss_conf 011373456788899999888628287266556767
Q gi|254780153|r 317 IASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAP 352 (391)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~ 352 (391)
T Consensus 306 ~------------~~l~~~L-~~~iavstGSACssg 328 (354)
T TIGR03235 306 P------------EALIRNL-KADAAVSTGSACTSS 328 (354)
T ss_pred H------------HHHHHHH-CCCCEEEHHHHCCCC
T ss_conf 9------------9999986-399899822420699