HHsearch alignment for GI: 254780153 and conserved domain: TIGR03246
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.06 E-value=2.9e-07 Score=65.61 Aligned_cols=309 Identities=14% Similarity=0.052 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC-------CCC-CEE
Q ss_conf 968999986321036532898899-99999999999996889985799974873489998753205-------789-707
Q gi|254780153|r 24 RPGWSLGILEGALLGRSHRCVLGK-ERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL-------GYR-GVD 94 (391)
Q Consensus 24 ~p~~v~~~~~~~~l~~sHRs~~f~-~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~-------~~~-~~~ 94 (391)
T Consensus 53 ~p~-i~~Ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~--~~~-~v~f-~~sGsEA~e~AlklAr~~~~~~~~~~k~~i 127 (397)
T TIGR03246 53 HPE-LVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT--FAD-KVFF-CNSGAEANEAALKLARRYALDKHGADKSEI 127 (397)
T ss_pred CHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCC-EEEE-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 889-99999999965777768634889999999997514--877-6997-286778999999999999985179997689
Q ss_pred EEEECCHHHHHHHHHHHCCCCCE---------EEEECCCCCCCCHHHCC--CCCCEEEEEEECCCC---EEECC------
Q ss_conf 99707368888876532387630---------67405777657867678--556579974202420---22032------
Q gi|254780153|r 95 VLAWESFGLGWMSDIRQLSLQDV---------REFTAPYGSLPDFSKVD--FDRDVVFVWNGTTSG---VCVPD------ 154 (391)
Q Consensus 95 ~~~~g~~~~r~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~--~~~~v~~~h~ETstG---v~~~~------ 154 (391)
T Consensus 128 is~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~~---d~~~~~~~~~~~iaAvi~EPv~g~gG~~~~~~~yl~~ 204 (397)
T TIGR03246 128 VAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN---DLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKG 204 (397)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC---CHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 9972786898564104689965567888999764204523---3999998528873799993877888987388899999
Q ss_pred EEEECCCCCCEEEEEECCH-HHH--CCC--CCCCCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 0350256861488640110-110--254--55685799970012001766515445677888765411445778312320
Q gi|254780153|r 155 VGFIPESREGLVICDATSA-VFA--RHI--DFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRM 229 (391)
Q Consensus 155 ~~~~~~~~~~llivD~vSs-~g~--~p~--d~~~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~ 229 (391)
T Consensus 205 lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~P~sav~~~~~i~~~~~---~---------- 271 (397)
T TIGR03246 205 LRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLK---V---------- 271 (397)
T ss_pred HHHHHHHCCCEEECCCEEECCCCCCCCCHHHCCCCCCCEEEECCCCCCCCEEEEEEECHHHHHHCC---C----------
T ss_conf 999999859358634122078777783143226989987887422468840489974488886518---7----------
Q ss_pred CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 01123210334786446664488999999998620103189999999977999999987479716766882003653178
Q gi|254780153|r 230 VKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSIC 309 (391)
Q Consensus 230 ~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~ 309 (391)
T Consensus 272 ---------~~h~~T~~gnpl~-~aaala~L~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~~~i~~--VRG~Glm~ 335 (397)
T TIGR03246 272 ---------GTHGTTYGGNPLA-CAVAGKVLDLVNTPELLA----GVKQRHDLFVDGLEKINARYNVFSE--IRGKGLLI 335 (397)
T ss_pred ---------CCCCCCCCCCHHH-HHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCEEE--EEECCEEE
T ss_conf ---------7738668829999-999999999998547999----9999999999999998741798775--42243599
Q ss_pred -EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -9824731011373456788899999888628287266556767505686158889999999999999999999
Q gi|254780153|r 310 -MKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDLLLLCDWLRWVFYFQ 382 (391)
Q Consensus 310 -~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~~~~RIg~~g~i~~~dv~~L~~aLe~~~~~~ 382 (391)
T Consensus 336 giel~~~~---------~~~a~~i~~~~~~~Gll~~~~g----~n~lrl~PPL~it~eeid~~l~~l~~al~~v 396 (397)
T TIGR03246 336 GAVLTEAY---------QGKAKQFVNAAAEEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred EEEECCCC---------CCHHHHHHHHHHHCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99972786---------3359999999997892893079----9979997885189999999999999999986