HHsearch alignment for GI: 254780153 and conserved domain: TIGR03246

>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.06  E-value=2.9e-07  Score=65.61  Aligned_cols=309  Identities=14%  Similarity=0.052  Sum_probs=158.8

Q ss_pred             CHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC-------CCC-CEE
Q ss_conf             968999986321036532898899-99999999999996889985799974873489998753205-------789-707
Q gi|254780153|r   24 RPGWSLGILEGALLGRSHRCVLGK-ERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL-------GYR-GVD   94 (391)
Q Consensus        24 ~p~~v~~~~~~~~l~~sHRs~~f~-~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~-------~~~-~~~   94 (391)
T Consensus        53 ~p~-i~~Ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~--~~~-~v~f-~~sGsEA~e~AlklAr~~~~~~~~~~k~~i  127 (397)
T TIGR03246        53 HPE-LVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT--FAD-KVFF-CNSGAEANEAALKLARRYALDKHGADKSEI  127 (397)
T ss_pred             CHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCC-EEEE-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             889-99999999965777768634889999999997514--877-6997-286778999999999999985179997689


Q ss_pred             EEEECCHHHHHHHHHHHCCCCCE---------EEEECCCCCCCCHHHCC--CCCCEEEEEEECCCC---EEECC------
Q ss_conf             99707368888876532387630---------67405777657867678--556579974202420---22032------
Q gi|254780153|r   95 VLAWESFGLGWMSDIRQLSLQDV---------REFTAPYGSLPDFSKVD--FDRDVVFVWNGTTSG---VCVPD------  154 (391)
Q Consensus        95 ~~~~g~~~~r~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~--~~~~v~~~h~ETstG---v~~~~------  154 (391)
T Consensus       128 is~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~~~~---d~~~~~~~~~~~iaAvi~EPv~g~gG~~~~~~~yl~~  204 (397)
T TIGR03246       128 VAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN---DLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKG  204 (397)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC---CHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             9972786898564104689965567888999764204523---3999998528873799993877888987388899999


Q ss_pred             EEEECCCCCCEEEEEECCH-HHH--CCC--CCCCCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf             0350256861488640110-110--254--55685799970012001766515445677888765411445778312320
Q gi|254780153|r  155 VGFIPESREGLVICDATSA-VFA--RHI--DFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRM  229 (391)
Q Consensus       155 ~~~~~~~~~~llivD~vSs-~g~--~p~--d~~~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~  229 (391)
T Consensus       205 lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~P~sav~~~~~i~~~~~---~----------  271 (397)
T TIGR03246       205 LRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLK---V----------  271 (397)
T ss_pred             HHHHHHHCCCEEECCCEEECCCCCCCCCHHHCCCCCCCEEEECCCCCCCCEEEEEEECHHHHHHCC---C----------
T ss_conf             999999859358634122078777783143226989987887422468840489974488886518---7----------


Q ss_pred             CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf             01123210334786446664488999999998620103189999999977999999987479716766882003653178
Q gi|254780153|r  230 VKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSIC  309 (391)
Q Consensus       230 ~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~  309 (391)
T Consensus       272 ---------~~h~~T~~gnpl~-~aaala~L~~i~~e~l~~----~~~~~g~~l~~~L~~l~~~~~~i~~--VRG~Glm~  335 (397)
T TIGR03246       272 ---------GTHGTTYGGNPLA-CAVAGKVLDLVNTPELLA----GVKQRHDLFVDGLEKINARYNVFSE--IRGKGLLI  335 (397)
T ss_pred             ---------CCCCCCCCCCHHH-HHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHCCCEEE--EEECCEEE
T ss_conf             ---------7738668829999-999999999998547999----9999999999999998741798775--42243599


Q ss_pred             -EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             -9824731011373456788899999888628287266556767505686158889999999999999999999
Q gi|254780153|r  310 -MKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDLLLLCDWLRWVFYFQ  382 (391)
Q Consensus       310 -~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~~~~~RIg~~g~i~~~dv~~L~~aLe~~~~~~  382 (391)
T Consensus       336 giel~~~~---------~~~a~~i~~~~~~~Gll~~~~g----~n~lrl~PPL~it~eeid~~l~~l~~al~~v  396 (397)
T TIGR03246       336 GAVLTEAY---------QGKAKQFVNAAAEEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             EEEECCCC---------CCHHHHHHHHHHHCCCEEEECC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99972786---------3359999999997892893079----9979997885189999999999999999986