HHsearch alignment for GI: 254780153 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=100.00 E-value=1.8e-30 Score=212.97 Aligned_cols=355 Identities=15% Similarity=0.171 Sum_probs=247.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
Q ss_conf 6468998886888776896899998632103---653289-----88999999999999999688998579997487348
Q gi|254780153|r 7 PTRKPKRPFFSSGPCAKRPGWSLGILEGALL---GRSHRC-----VLGKERINKAIQLTRKVLEVPENYRIAIVPASDTG 78 (391)
Q Consensus 7 ~~~~p~~~~F~pGP~~~~p~~v~~~~~~~~l---~~sHRs-----~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~ 78 (391)
T Consensus 11 P~l~~~~iYlDnAatt~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iif-ts~~Te 89 (398)
T TIGR03392 11 PALQDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVW-TRGTTE 89 (398)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHH
T ss_conf 4889990886786326898999999999998634888751439999999999999999999709599897999-587799
Q ss_pred HHHHHHHHC----CCCCCEEEEEECCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHC-----CCCCCEEEEEEEC
Q ss_conf 999875320----578970799707368---8888765323876306740577765786767-----8556579974202
Q gi|254780153|r 79 AVEMALWSL----LGYRGVDVLAWESFG---LGWMSDIRQLSLQDVREFTAPYGSLPDFSKV-----DFDRDVVFVWNGT 146 (391)
Q Consensus 79 ~~ea~~~nl----~~~~~~~~~~~g~~~---~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~v~~~h~ET 146 (391)
T Consensus 90 ~~n~~~~~~~~~~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g-~~v~~~~~~~~~~~d~~~l~~~i~~~T~lVsi~~vsn 168 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTG-AKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSN 168 (398)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 999898776887239989899824400342389998876448-5279961478898799999985257870899825556
Q ss_pred CCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf 42022032035--0256861488640110110254556--8579997001200176651544567788876541144577
Q gi|254780153|r 147 TSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWP 222 (391)
Q Consensus 147 stGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~ 222 (391)
T Consensus 169 ~~G~i~pi~~I~~~~~~~g~~~~vDa~Q~~g~~~idv~~~~~D~~~~S~hK-l~GP~G~G~Ly~~~~~~~~l~p~~~Gg~ 247 (398)
T TIGR03392 169 VTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKTELLEAMPPWQGGGK 247 (398)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCEEEEEECCHHHHHCCCCCCCCC
T ss_conf 788858799999999865974786334115620334102678779986553-5699841899984114743797357997
Q ss_pred CCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 83123200112321033478644666448899999999862010318999999997799999998747971676688200
Q gi|254780153|r 223 LPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETT 302 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~ 302 (391)
T Consensus 248 ~~~~~~~~~~~-~-~~~~~r~e~GT~n~~~i~gl~~al~~l~~~-~~~~~~~~~~~L~~~~~~~l~~l~g~~~~~~-~-- 321 (398)
T TIGR03392 248 MLSHVSFDGFI-P-QAVPHRFEAGTPNIAGVIGLSAALEWLTDI-DIAAAEAWSVSLADLAEERLAQLPGFRSFRC-P-- 321 (398)
T ss_pred CCCCCCCCCCC-C-CCCCHHCCCCCCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-C--
T ss_conf 34433477764-4-555021146885487899999999999964-9999999999999999999863899644579-9--
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC--------CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 3653178982473101137345678889999988862828726655676--------75056861588899999999999
Q gi|254780153|r 303 RSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA--------PLGLRVWVGVTVEKEDLLLLCDW 374 (391)
Q Consensus 303 rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~--------~~~~RIg~~g~i~~~dv~~L~~a 374 (391)
T Consensus 322 -~~~~~~f~~~~~~------------~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~edId~li~a 388 (398)
T TIGR03392 322 -GSSLLAFDFAGVH------------HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDA 388 (398)
T ss_pred -CCCEEEEEECCCC------------HHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -9967999879939------------999999997789799668665489999868998799967888899999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780153|r 375 LRWVFYFQK 383 (391)
Q Consensus 375 Le~~~~~~k 383 (391)
T Consensus 389 L~~~l~~l~ 397 (398)
T TIGR03392 389 VGAALELLN 397 (398)
T ss_pred HHHHHHHHC
T ss_conf 999999843