HHsearch alignment for GI: 254780153 and conserved domain: TIGR03392

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=100.00  E-value=1.8e-30  Score=212.97  Aligned_cols=355  Identities=15%  Similarity=0.171  Sum_probs=247.0

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
Q ss_conf             6468998886888776896899998632103---653289-----88999999999999999688998579997487348
Q gi|254780153|r    7 PTRKPKRPFFSSGPCAKRPGWSLGILEGALL---GRSHRC-----VLGKERINKAIQLTRKVLEVPENYRIAIVPASDTG   78 (391)
Q Consensus         7 ~~~~p~~~~F~pGP~~~~p~~v~~~~~~~~l---~~sHRs-----~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~   78 (391)
T Consensus        11 P~l~~~~iYlDnAatt~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iif-ts~~Te   89 (398)
T TIGR03392        11 PALQDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVW-TRGTTE   89 (398)
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHH
T ss_conf             4889990886786326898999999999998634888751439999999999999999999709599897999-587799


Q ss_pred             HHHHHHHHC----CCCCCEEEEEECCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHC-----CCCCCEEEEEEEC
Q ss_conf             999875320----578970799707368---8888765323876306740577765786767-----8556579974202
Q gi|254780153|r   79 AVEMALWSL----LGYRGVDVLAWESFG---LGWMSDIRQLSLQDVREFTAPYGSLPDFSKV-----DFDRDVVFVWNGT  146 (391)
Q Consensus        79 ~~ea~~~nl----~~~~~~~~~~~g~~~---~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~v~~~h~ET  146 (391)
T Consensus        90 ~~n~~~~~~~~~~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g-~~v~~~~~~~~~~~d~~~l~~~i~~~T~lVsi~~vsn  168 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTG-AKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSN  168 (398)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf             999898776887239989899824400342389998876448-5279961478898799999985257870899825556


Q ss_pred             CCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf             42022032035--0256861488640110110254556--8579997001200176651544567788876541144577
Q gi|254780153|r  147 TSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWP  222 (391)
Q Consensus       147 stGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~  222 (391)
T Consensus       169 ~~G~i~pi~~I~~~~~~~g~~~~vDa~Q~~g~~~idv~~~~~D~~~~S~hK-l~GP~G~G~Ly~~~~~~~~l~p~~~Gg~  247 (398)
T TIGR03392       169 VTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKTELLEAMPPWQGGGK  247 (398)
T ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCEEEEEECCHHHHHCCCCCCCCC
T ss_conf             788858799999999865974786334115620334102678779986553-5699841899984114743797357997


Q ss_pred             CCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             83123200112321033478644666448899999999862010318999999997799999998747971676688200
Q gi|254780153|r  223 LPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETT  302 (391)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~  302 (391)
T Consensus       248 ~~~~~~~~~~~-~-~~~~~r~e~GT~n~~~i~gl~~al~~l~~~-~~~~~~~~~~~L~~~~~~~l~~l~g~~~~~~-~--  321 (398)
T TIGR03392       248 MLSHVSFDGFI-P-QAVPHRFEAGTPNIAGVIGLSAALEWLTDI-DIAAAEAWSVSLADLAEERLAQLPGFRSFRC-P--  321 (398)
T ss_pred             CCCCCCCCCCC-C-CCCCHHCCCCCCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-C--
T ss_conf             34433477764-4-555021146885487899999999999964-9999999999999999999863899644579-9--


Q ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC--------CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             3653178982473101137345678889999988862828726655676--------75056861588899999999999
Q gi|254780153|r  303 RSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA--------PLGLRVWVGVTVEKEDLLLLCDW  374 (391)
Q Consensus       303 rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~--------~~~~RIg~~g~i~~~dv~~L~~a  374 (391)
T Consensus       322 -~~~~~~f~~~~~~------------~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~edId~li~a  388 (398)
T TIGR03392       322 -GSSLLAFDFAGVH------------HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDA  388 (398)
T ss_pred             -CCCEEEEEECCCC------------HHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             -9967999879939------------999999997789799668665489999868998799967888899999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780153|r  375 LRWVFYFQK  383 (391)
Q Consensus       375 Le~~~~~~k  383 (391)
T Consensus       389 L~~~l~~l~  397 (398)
T TIGR03392       389 VGAALELLN  397 (398)
T ss_pred             HHHHHHHHC
T ss_conf             999999843