HHsearch alignment for GI: 254780153 and conserved domain: TIGR03402

>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.97  E-value=1.2e-27  Score=195.16  Aligned_cols=328  Identities=17%  Similarity=0.133  Sum_probs=228.4

Q ss_pred             CCCCCCCHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC--
Q ss_conf             887768968999986321036-------53289889999999999999996889985799974873489998753205--
Q gi|254780153|r   18 SGPCAKRPGWSLGILEGALLG-------RSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL--   88 (391)
Q Consensus        18 pGP~~~~p~~v~~~~~~~~l~-------~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~--   88 (391)
T Consensus         6 AAtt~~~~~-V~~a~~~~~~~~~~np~~~h~~~~~a~~~~e~aR~~iA~~lga~~~-eIvF-t~~~T~a~n~~i~~~~~~   82 (379)
T TIGR03402         6 NATTRVDPE-VLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIF-TSGGTESDNTAIKSALAA   82 (379)
T ss_pred             CCCCCCCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEE-ECCHHHHHHHHHHHHHHH
T ss_conf             665889999-9999999999658997765899999999999999999998299967-3999-288799999999999986


Q ss_pred             -CCCCEEEEEECCHHH--HHHHHHHHCCCCCEEEEEC-CCCCCCCHHHC-----CCCCCEEEEEEECCCCEEECCEEE--
Q ss_conf             -789707997073688--8887653238763067405-77765786767-----855657997420242022032035--
Q gi|254780153|r   89 -GYRGVDVLAWESFGL--GWMSDIRQLSLQDVREFTA-PYGSLPDFSKV-----DFDRDVVFVWNGTTSGVCVPDVGF--  157 (391)
Q Consensus        89 -~~~~~~~~~~g~~~~--r~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~-----~~~~~v~~~h~ETstGv~~~~~~~--  157 (391)
T Consensus        83 ~~~~d~Ii~s~~eH~a~~~~~~~l~~~-g~~v~~~~~~~~g~-id~~~l~~~l~~~T~lvs~~~~sn~tG~i~pv~~I~~  160 (379)
T TIGR03402        83 QPEKRHIITTAVEHPAVLSLCQHLEKQ-GYKVTYLPVDEEGR-LDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGE  160 (379)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCCC-CCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             799999998013104566799999965-98899970378982-6426678872678628996125788870178999999


Q ss_pred             ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf             0256861488640110110254556--85799970012001766515445677888765411445778312320011232
Q gi|254780153|r  158 IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRV  235 (391)
Q Consensus       158 ~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~  235 (391)
T Consensus       161 ~~~~~g~~~~vDa~Q~~g~~pidv~~~~~D~~~~S~hK-~~GP~G~G~Ly~r~~~--~---~~P~-----~~G--g----  223 (379)
T TIGR03402       161 IAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGT--R---FRPL-----LRG--G----  223 (379)
T ss_pred             HHHHCCCEEEEECCCCCCCCCCCHHHHCCCCEECCHHH-CCCCCCEEEEEECCCC--C---CCCC-----CCC--C----
T ss_conf             99763988994531124664640344157721202111-3688725999982676--6---6876-----788--8----


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             1033478644666448899999999862010318999999997799999998-747971676688200365317898247
Q gi|254780153|r  236 MEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFI-QENDWIENLAVDETTRSNTSICMKIVD  314 (391)
Q Consensus       236 ~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i-~~~~~~~~~~~~~~~rS~~~v~~~~~d  314 (391)
T Consensus       224 --~~e~~~~~GT~n~~~i~gl~~a~~~~~~--~~~~~~~~~~~l~~~l~~~ll~~~~~~~i-~g~~~~r~p~~~~~~~~~  298 (379)
T TIGR03402       224 --HQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARL-NGDPTKRLPNTVNISFEY  298 (379)
T ss_pred             --CCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCHHHCCCCCEEECCCC
T ss_conf             --8777767897129999999999999997--59999999999999999999850898275-478666488730323699


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC-------------------CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             3101137345678889999988862828726655676-------------------750568615888999999999999
Q gi|254780153|r  315 SDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA-------------------PLGLRVWVGVTVEKEDLLLLCDWL  375 (391)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~-------------------~~~~RIg~~g~i~~~dv~~L~~aL  375 (391)
T Consensus       299 ~~------------~~~i~~~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT~edId~li~aL  366 (379)
T TIGR03402       299 IE------------GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVL  366 (379)
T ss_pred             CC------------HHHHHHHHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89------------999999845189299750321599986249999759983333956999738999999999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780153|r  376 RWVFYFQKI  384 (391)
Q Consensus       376 e~~~~~~k~  384 (391)
T Consensus       367 ~~iv~~lr~  375 (379)
T TIGR03402       367 PPIIARLRA  375 (379)
T ss_pred             HHHHHHHHH
T ss_conf             999999985