HHsearch alignment for GI: 254780153 and conserved domain: TIGR03402
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.97 E-value=1.2e-27 Score=195.16 Aligned_cols=328 Identities=17% Similarity=0.133 Sum_probs=228.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC--
Q ss_conf 887768968999986321036-------53289889999999999999996889985799974873489998753205--
Q gi|254780153|r 18 SGPCAKRPGWSLGILEGALLG-------RSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL-- 88 (391)
Q Consensus 18 pGP~~~~p~~v~~~~~~~~l~-------~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~-- 88 (391)
T Consensus 6 AAtt~~~~~-V~~a~~~~~~~~~~np~~~h~~~~~a~~~~e~aR~~iA~~lga~~~-eIvF-t~~~T~a~n~~i~~~~~~ 82 (379)
T TIGR03402 6 NATTRVDPE-VLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIF-TSGGTESDNTAIKSALAA 82 (379)
T ss_pred CCCCCCCHH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEE-ECCHHHHHHHHHHHHHHH
T ss_conf 665889999-9999999999658997765899999999999999999998299967-3999-288799999999999986
Q ss_pred -CCCCEEEEEECCHHH--HHHHHHHHCCCCCEEEEEC-CCCCCCCHHHC-----CCCCCEEEEEEECCCCEEECCEEE--
Q ss_conf -789707997073688--8887653238763067405-77765786767-----855657997420242022032035--
Q gi|254780153|r 89 -GYRGVDVLAWESFGL--GWMSDIRQLSLQDVREFTA-PYGSLPDFSKV-----DFDRDVVFVWNGTTSGVCVPDVGF-- 157 (391)
Q Consensus 89 -~~~~~~~~~~g~~~~--r~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~-----~~~~~v~~~h~ETstGv~~~~~~~-- 157 (391)
T Consensus 83 ~~~~d~Ii~s~~eH~a~~~~~~~l~~~-g~~v~~~~~~~~g~-id~~~l~~~l~~~T~lvs~~~~sn~tG~i~pv~~I~~ 160 (379)
T TIGR03402 83 QPEKRHIITTAVEHPAVLSLCQHLEKQ-GYKVTYLPVDEEGR-LDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGE 160 (379)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCCC-CCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 799999998013104566799999965-98899970378982-6426678872678628996125788870178999999
Q ss_pred ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf 0256861488640110110254556--85799970012001766515445677888765411445778312320011232
Q gi|254780153|r 158 IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRV 235 (391)
Q Consensus 158 ~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T Consensus 161 ~~~~~g~~~~vDa~Q~~g~~pidv~~~~~D~~~~S~hK-~~GP~G~G~Ly~r~~~--~---~~P~-----~~G--g---- 223 (379)
T TIGR03402 161 IAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGT--R---FRPL-----LRG--G---- 223 (379)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCHHHHCCCCEECCHHH-CCCCCCEEEEEECCCC--C---CCCC-----CCC--C----
T ss_conf 99763988994531124664640344157721202111-3688725999982676--6---6876-----788--8----
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 1033478644666448899999999862010318999999997799999998-747971676688200365317898247
Q gi|254780153|r 236 MEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFI-QENDWIENLAVDETTRSNTSICMKIVD 314 (391)
Q Consensus 236 ~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i-~~~~~~~~~~~~~~~rS~~~v~~~~~d 314 (391)
T Consensus 224 --~~e~~~~~GT~n~~~i~gl~~a~~~~~~--~~~~~~~~~~~l~~~l~~~ll~~~~~~~i-~g~~~~r~p~~~~~~~~~ 298 (379)
T TIGR03402 224 --HQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARL-NGDPTKRLPNTVNISFEY 298 (379)
T ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCHHHCCCCCEEECCCC
T ss_conf --8777767897129999999999999997--59999999999999999999850898275-478666488730323699
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC-------------------CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 3101137345678889999988862828726655676-------------------750568615888999999999999
Q gi|254780153|r 315 SDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA-------------------PLGLRVWVGVTVEKEDLLLLCDWL 375 (391)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~-------------------~~~~RIg~~g~i~~~dv~~L~~aL 375 (391)
T Consensus 299 ~~------------~~~i~~~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ynT~edId~li~aL 366 (379)
T TIGR03402 299 IE------------GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVL 366 (379)
T ss_pred CC------------HHHHHHHHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89------------999999845189299750321599986249999759983333956999738999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780153|r 376 RWVFYFQKI 384 (391)
Q Consensus 376 e~~~~~~k~ 384 (391)
T Consensus 367 ~~iv~~lr~ 375 (379)
T TIGR03402 367 PPIIARLRA 375 (379)
T ss_pred HHHHHHHHH
T ss_conf 999999985