HHsearch alignment for GI: 254780153 and conserved domain: TIGR03403
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.96 E-value=1.2e-26 Score=188.83 Aligned_cols=330 Identities=16% Similarity=0.108 Sum_probs=234.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC------CCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC--
Q ss_conf 8877689689999863210365------328-9889999999999999996889985799974873489998753205--
Q gi|254780153|r 18 SGPCAKRPGWSLGILEGALLGR------SHR-CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL-- 88 (391)
Q Consensus 18 pGP~~~~p~~v~~~~~~~~l~~------sHR-s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~-- 88 (391)
T Consensus 6 aAtt~~~~~-Vi~~~~~~~~~~~~Np~s~h~~~~~a~~~~e~aR~~ia~~l~a~~~~eIvF-Tsg~Tea~N~~~~gl~~~ 83 (382)
T TIGR03403 6 NATTMLDPK-VKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIII-TSCATESNNWVLKGVYFD 83 (382)
T ss_pred CCCCCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHHHHHHHHHHHHHH
T ss_conf 356899999-999999999866899632539999999999999999999759699786999-387589999999999999
Q ss_pred ---CCC-CEEEEEECC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCHHHCC-----CCCCEEEEEEECCCCEEECCEEE
Q ss_conf ---789-707997073-68-88887653238763067405777657867678-----55657997420242022032035
Q gi|254780153|r 89 ---GYR-GVDVLAWES-FG-LGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD-----FDRDVVFVWNGTTSGVCVPDVGF 157 (391)
Q Consensus 89 ---~~~-~~~~~~~g~-~~-~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~v~~~h~ETstGv~~~~~~~ 157 (391)
T Consensus 84 ~~~~~~~~~ii~s~~EH~sv~~~~~~l~~~G-~~v~~~~~d~~G~~d~~~l~~~l~~~T~LVai~~anN~tG~i~pv~~I 162 (382)
T TIGR03403 84 EILKGGKNHIITTEVEHPAVRATCAFLESLG-VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEI 162 (382)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 8636899999995565153899999999659-789997759998588999997601466067763147677777879999
Q ss_pred --ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHH
Q ss_conf --0256861488640110110254556--857999700120017665154456778887654114457783123200112
Q gi|254780153|r 158 --IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGG 233 (391)
Q Consensus 158 --~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T Consensus 163 ~~~~~~~g~~~~vDa~Q~~g~~pidv~~l~~D~l~~S~HK-~~GP~GiG~L~ir~~~-----~l~P~-----~~Gg---- 227 (382)
T TIGR03403 163 GEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHK-FHGPKGVGGLYIRKGV-----ELTPL-----FHGG---- 227 (382)
T ss_pred HHHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCCC-----CCCCC-----CCCC----
T ss_conf 9999872987996713413564643232346524531010-3688834999986777-----65876-----5898----
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 32103347864466644889999999986201031899999999779999999874797167668820036531789824
Q gi|254780153|r 234 RVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIV 313 (391)
Q Consensus 234 ~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~ 313 (391)
T Consensus 228 ----~~~~~~r~GT~n~~~i~~l~~A~~~~~~--~~~~~~~~~~~L~~~l~~~L~~i~~~~i~-g~~~~r~p~~~~~~~~ 300 (382)
T TIGR03403 228 ----EHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFVV-GDREHRVPNTILISIK 300 (382)
T ss_pred ----CCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCHHHCCCCEEEEECC
T ss_conf ----7747612798678899999999999999--89999999999999999999817794671-6833258857986279
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC-------------------CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 73101137345678889999988862828726655676-------------------75056861588899999999999
Q gi|254780153|r 314 DSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA-------------------PLGLRVWVGVTVEKEDLLLLCDW 374 (391)
Q Consensus 314 d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~-------------------~~~~RIg~~g~i~~~dv~~L~~a 374 (391)
T Consensus 301 ~i~------------~~~~~~~L~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT~eeId~~i~~ 368 (382)
T TIGR03403 301 GVE------------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEV 368 (382)
T ss_pred CCC------------HHHHHHHHCCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 989------------89999984709979975577289988758999971998544595799975899999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780153|r 375 LRWVFYFQKI 384 (391)
Q Consensus 375 Le~~~~~~k~ 384 (391)
T Consensus 369 l~~~v~~lr~ 378 (382)
T TIGR03403 369 FKKAVQRLRA 378 (382)
T ss_pred HHHHHHHHHH
T ss_conf 9999999987