HHsearch alignment for GI: 254780153 and conserved domain: TIGR03403

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.96  E-value=1.2e-26  Score=188.83  Aligned_cols=330  Identities=16%  Similarity=0.108  Sum_probs=234.8

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCC------CCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCC--
Q ss_conf             8877689689999863210365------328-9889999999999999996889985799974873489998753205--
Q gi|254780153|r   18 SGPCAKRPGWSLGILEGALLGR------SHR-CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLL--   88 (391)
Q Consensus        18 pGP~~~~p~~v~~~~~~~~l~~------sHR-s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~--   88 (391)
T Consensus         6 aAtt~~~~~-Vi~~~~~~~~~~~~Np~s~h~~~~~a~~~~e~aR~~ia~~l~a~~~~eIvF-Tsg~Tea~N~~~~gl~~~   83 (382)
T TIGR03403         6 NATTMLDPK-VKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIII-TSCATESNNWVLKGVYFD   83 (382)
T ss_pred             CCCCCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCHHHHHHHHHHHHHHH
T ss_conf             356899999-999999999866899632539999999999999999999759699786999-387589999999999999


Q ss_pred             ---CCC-CEEEEEECC-HH-HHHHHHHHHCCCCCEEEEECCCCCCCCHHHCC-----CCCCEEEEEEECCCCEEECCEEE
Q ss_conf             ---789-707997073-68-88887653238763067405777657867678-----55657997420242022032035
Q gi|254780153|r   89 ---GYR-GVDVLAWES-FG-LGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD-----FDRDVVFVWNGTTSGVCVPDVGF  157 (391)
Q Consensus        89 ---~~~-~~~~~~~g~-~~-~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~v~~~h~ETstGv~~~~~~~  157 (391)
T Consensus        84 ~~~~~~~~~ii~s~~EH~sv~~~~~~l~~~G-~~v~~~~~d~~G~~d~~~l~~~l~~~T~LVai~~anN~tG~i~pv~~I  162 (382)
T TIGR03403        84 EILKGGKNHIITTEVEHPAVRATCAFLESLG-VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEI  162 (382)
T ss_pred             HHHCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf             8636899999995565153899999999659-789997759998588999997601466067763147677777879999


Q ss_pred             --ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHH
Q ss_conf             --0256861488640110110254556--857999700120017665154456778887654114457783123200112
Q gi|254780153|r  158 --IPESREGLVICDATSAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGG  233 (391)
Q Consensus       158 --~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~  233 (391)
T Consensus       163 ~~~~~~~g~~~~vDa~Q~~g~~pidv~~l~~D~l~~S~HK-~~GP~GiG~L~ir~~~-----~l~P~-----~~Gg----  227 (382)
T TIGR03403       163 GEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHK-FHGPKGVGGLYIRKGV-----ELTPL-----FHGG----  227 (382)
T ss_pred             HHHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCCC-----CCCCC-----CCCC----
T ss_conf             9999872987996713413564643232346524531010-3688834999986777-----65876-----5898----


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             32103347864466644889999999986201031899999999779999999874797167668820036531789824
Q gi|254780153|r  234 RVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIV  313 (391)
Q Consensus       234 ~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~  313 (391)
T Consensus       228 ----~~~~~~r~GT~n~~~i~~l~~A~~~~~~--~~~~~~~~~~~L~~~l~~~L~~i~~~~i~-g~~~~r~p~~~~~~~~  300 (382)
T TIGR03403       228 ----EHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFVV-GDREHRVPNTILISIK  300 (382)
T ss_pred             ----CCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCHHHCCCCEEEEECC
T ss_conf             ----7747612798678899999999999999--89999999999999999999817794671-6833258857986279


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCC-------------------CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             73101137345678889999988862828726655676-------------------75056861588899999999999
Q gi|254780153|r  314 DSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA-------------------PLGLRVWVGVTVEKEDLLLLCDW  374 (391)
Q Consensus       314 d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~~-------------------~~~~RIg~~g~i~~~dv~~L~~a  374 (391)
T Consensus       301 ~i~------------~~~~~~~L~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT~eeId~~i~~  368 (382)
T TIGR03403       301 GVE------------GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEV  368 (382)
T ss_pred             CCC------------HHHHHHHHCCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             989------------89999984709979975577289988758999971998544595799975899999999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780153|r  375 LRWVFYFQKI  384 (391)
Q Consensus       375 Le~~~~~~k~  384 (391)
T Consensus       369 l~~~v~~lr~  378 (382)
T TIGR03403       369 FKKAVQRLRA  378 (382)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999987