HHsearch alignment for GI: 254780153 and conserved domain: TIGR03531
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=90.01 E-value=1.4 Score=23.02 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHH-HHHHHCCCCC-CEEEEEECCHHHHHH-HHHHHCCCCCEEE
Q ss_conf 988999999999999999688998579997487348999-8753205789-707997073688888-7653238763067
Q gi|254780153|r 43 CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVE-MALWSLLGYR-GVDVLAWESFGLGWM-SDIRQLSLQDVRE 119 (391)
Q Consensus 43 s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~e-a~~~nl~~~~-~~~~~~~g~~~~r~~-~~~~~~~~~~~~~ 119 (391)
T Consensus 100 SSll~kLTn~l~ld~lr~~G~~s~~~~~vvP-~ATGMsL~LcL~alr~~rp~a~yViw~RiDQKSc~K~i~~AG-l~piv 177 (444)
T TIGR03531 100 SSLLYKLTNKLVKDFLKLLGLRSVKSAIVVP-LATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAG-LEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCC-CEEEE
T ss_conf 2899999999999999983985326579962-534518999999985018899889985355532688998659-72799
Q ss_pred EE-CCCC--CCCCHHHCCC------CCCEEEEEEECCCCE-EEC----CEEEECCCCCCEEEEEEC---CH-HHHCCCC-
Q ss_conf 40-5777--6578676785------565799742024202-203----203502568614886401---10-1102545-
Q gi|254780153|r 120 FT-APYG--SLPDFSKVDF------DRDVVFVWNGTTSGV-CVP----DVGFIPESREGLVICDAT---SA-VFARHID- 180 (391)
Q Consensus 120 ~~-~~~g--~~~~~~~~~~------~~~v~~~h~ETstGv-~~~----~~~~~~~~~~~llivD~v---Ss-~g~~p~d- 180 (391)
T Consensus 178 ie~~l~gd~l~tdv~~ie~~i~~~g~~~i~cVlSTTScFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~i~~ 257 (444)
T TIGR03531 178 IETVLDGDRLTTDVEDIERAIEEIGPENILCVLSTTSCFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEKINK 257 (444)
T ss_pred EEEEECCCEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHH
T ss_conf 74075188774699999999998286764799853654599997669999999997499837842036617999999999
Q ss_pred ---CCCCEEEEECCHHCCCCCCCCEEEEECHH
Q ss_conf ---56857999700120017665154456778
Q gi|254780153|r 181 ---FNKLDVVTFSAQKVLGGEAGFGIIILSPA 209 (391)
Q Consensus 181 ---~~~iDv~~a~sQK~l~~ppGl~~v~~s~~ 209 (391)
T Consensus 258 A~r~GRVDa~VQStDKNflVPVGGaII~s~d~ 289 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE 289 (444)
T ss_pred HHHCCCCEEEEEECCCCEEEECCCEEEEECCH
T ss_conf 98649831999706866254348748971888