HHsearch alignment for GI: 254780153 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.99 E-value=3.3e-06 Score=58.84 Aligned_cols=303 Identities=13% Similarity=0.069 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCHHHHHHHHHHCCCCCC---EEEEE
Q ss_conf 689999863210365328988---99999999999999968899857-999748734899987532057897---07997
Q gi|254780153|r 25 PGWSLGILEGALLGRSHRCVL---GKERINKAIQLTRKVLEVPENYR-IAIVPASDTGAVEMALWSLLGYRG---VDVLA 97 (391)
Q Consensus 25 p~~v~~~~~~~~l~~sHRs~~---f~~i~~~~~~~l~~l~~~p~~y~-v~~l~GsgT~~~ea~~~nl~~~~~---~~~~~ 97 (391)
T Consensus 15 P~~i~~al~~a~~~-~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~~~~~~~gd~~~~Vlv~ 93 (350)
T TIGR03537 15 PPIIRNALKNAVPE-VSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG 93 (350)
T ss_pred CHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 79999999996021-58998984749999999999999868998978779987883899999999973888778769994
Q ss_pred ECCHHHHHHHHHHHCCCCCEEEEE--CCCCCCCCHHHCCC-----CCCEEEEEEECCCCEEECCEE-----EECCCCCCE
Q ss_conf 073688888765323876306740--57776578676785-----565799742024202203203-----502568614
Q gi|254780153|r 98 WESFGLGWMSDIRQLSLQDVREFT--APYGSLPDFSKVDF-----DRDVVFVWNGTTSGVCVPDVG-----FIPESREGL 165 (391)
Q Consensus 98 ~g~~~~r~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~-----~~~v~~~h~ETstGv~~~~~~-----~~~~~~~~l 165 (391)
T Consensus 94 ~P~y~~y-~~~~~-~~g~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v~s~~~l~~l~~~a~~~~~~ 171 (350)
T TIGR03537 94 TPGYPVY-ERGAL-FAGGEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAVAPRSYLEETIAICQEHNII 171 (350)
T ss_pred CCCCCCH-HHHHH-HCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 6987306-99999-769989997535544887799999974666871999899989836476999999999863236907
Q ss_pred EEEEECCH---HHHCCC-----CCCCCEEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf 88640110---110254-----556857999700120017665--15445677888765411445778312320011232
Q gi|254780153|r 166 VICDATSA---VFARHI-----DFNKLDVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRV 235 (391)
Q Consensus 166 livD~vSs---~g~~p~-----d~~~iDv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T Consensus 172 vi~DE~Y~~l~~~~~~~~~~~~~~~~~-i~~~S~SK~~~~-pGlR~G~~~~~~~li~~~~~~~~---------------- 233 (350)
T TIGR03537 172 LCSDECYTEIYFGEPPHSALEVGMENV-LAFHSLSKRSGM-TGYRSGFVAGDEKLISFLKKLRA---------------- 233 (350)
T ss_pred EEEEHHHHHHHCCCCCCCHHHHCCCCE-EEEECCCCCCCC-CCCEEEEEECCHHHHHHHHHHHH----------------
T ss_conf 984312245534899877556346877-999667545046-77559999789999999999862----------------
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 10334786446664488999999998620103189999999977999999987479716766882003653178982473
Q gi|254780153|r 236 MEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDS 315 (391)
Q Consensus 236 ~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~ 315 (391)
T Consensus 234 ------~~~~~~~~~-~q~a~~~~~~---~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~p~----g~~~~w~~~~~~ 298 (350)
T TIGR03537 234 ------NFGVASPDF-VQAAAKAAWS---DDSHVIERRKIFRRKRDLFLEFFNKKG-LEYLYPD----ATFYLWVKVPNG 298 (350)
T ss_pred ------HCCCCHHHH-HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEECCC----CEEEEEEECCCC
T ss_conf ------067772899-9999999956---809999999999999999999986489-8882688----225998979999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 10113734567888999998886282872665-5676750-5686158889999999999999
Q gi|254780153|r 316 DIASLDINSQKSFCKSMLSFLEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLLLCDWLR 376 (391)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~L~~aLe 376 (391)
T Consensus 299 ~----~-------~~~~~~~ll~~gV~v~pG~~Fg~~~~~~~Rl~~~--~~~e~l~ealrrl~ 348 (350)
T TIGR03537 299 I----S-------SKDYALRLLENGIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRIWE 348 (350)
T ss_pred C----C-------HHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEE--CCHHHHHHHHHHHH
T ss_conf 8----9-------9999999997998997673118999986999972--89999999999986