HHsearch alignment for GI: 254780153 and conserved domain: TIGR03538
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.58 E-value=7e-05 Score=50.41 Aligned_cols=315 Identities=15% Similarity=0.108 Sum_probs=157.8
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCC--C-CEEEEECCCCHHHHHHHHHHC
Q ss_conf 886888-77689689999863210365328988--99999999999999968899--8-579997487348999875320
Q gi|254780153|r 14 PFFSSG-PCAKRPGWSLGILEGALLGRSHRCVL--GKERINKAIQLTRKVLEVPE--N-YRIAIVPASDTGAVEMALWSL 87 (391)
Q Consensus 14 ~~F~pG-P~~~~p~~v~~~~~~~~l~~sHRs~~--f~~i~~~~~~~l~~l~~~p~--~-y~v~~l~GsgT~~~ea~~~nl 87 (391)
T Consensus 32 I~L~iG~Pd~~~P~~v~ea~~~al~~~~~Y~~~~G~~~LReAia~~~~~~~~~~~~~dp~~~I~vt~Ga~~al~~~~~~l 111 (394)
T TIGR03538 32 IALSIGEPKHATPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV 111 (394)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 87848889999779999999998438889999988699999999999997398877896776998988899999999997
Q ss_pred CCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCHHHCCC-----CCCEEEEEEECCCCEEECCEE---
Q ss_conf 5789707997-07368888876532387630674--057776578676785-----565799742024202203203---
Q gi|254780153|r 88 LGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREF--TAPYGSLPDFSKVDF-----DRDVVFVWNGTTSGVCVPDVG--- 156 (391)
Q Consensus 88 ~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~-----~~~v~~~h~ETstGv~~~~~~--- 156 (391)
T Consensus 112 ~~pGd~~~V~~p~P~Y~~-y~~~~~~~g~~~~~v~~~~e~~~~~d~~~l~~~~~~~tk~iil~sP~NPTG~v~s~~~l~~ 190 (394)
T TIGR03538 112 INPGQAPLVVMPNPFYQI-YEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLETLKK 190 (394)
T ss_pred CCCCCCEEEEECCCCCCC-CHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 299981089947886645-2999997599899758673458888999998745236659998899999897778799999
Q ss_pred --EECCCCCCEEEEEECCHHHHC-----CC---------CCCCCE--EEEECCHHCCCCCCCC--EEEEECHHHHHHHHH
Q ss_conf --502568614886401101102-----54---------556857--9997001200176651--544567788876541
Q gi|254780153|r 157 --FIPESREGLVICDATSAVFAR-----HI---------DFNKLD--VVTFSAQKVLGGEAGF--GIIILSPASVERLEK 216 (391)
Q Consensus 157 --~~~~~~~~llivD~vSs~g~~-----p~---------d~~~iD--v~~a~sQK~l~~ppGl--~~v~~s~~al~~~~~ 216 (391)
T Consensus 191 l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~~~~~i~~~~~ 269 (394)
T TIGR03538 191 LIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSNL-PGLRSGFVAGDAEILKAFLR 269 (394)
T ss_pred HHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CCCEEEEEECCHHHHHHHHH
T ss_conf 99997326769998068332785788897378777766254444767999556544454-67517999579999999998
Q ss_pred CCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 14457783123200112321033478644666448899999999862010318999999997799999998747971676
Q gi|254780153|r 217 YVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENL 296 (391)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~ 296 (391)
T Consensus 270 ~~~----------------------~~~~~~~-~~~q~a~~aa~~---~~~~~~~~r~~~~~r~~~~~~~L~~~--~~~~ 321 (394)
T TIGR03538 270 YRT----------------------YHGCAMP-PPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILGPV--LDLE 321 (394)
T ss_pred HCC----------------------CCCCCCC-HHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHCC--CCCC
T ss_conf 522----------------------3742689-999999999848---98999999999999999999986427--9625
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC--C-----CCCCCE-EEEECCCCCCHHHH
Q ss_conf 688200365317898247310113734567888999998886282872665--5-----676750-56861588899999
Q gi|254780153|r 297 AVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS--Y-----RDAPLG-LRVWVGVTVEKEDL 368 (391)
Q Consensus 297 ~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~-----r~~~~~-~RIg~~g~i~~~dv 368 (391)
T Consensus 322 --~P~--Gg~y~w~~~~~------~---~~~f---~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s~~~--~~e~l 383 (394)
T TIGR03538 322 --LPD--AGFYLWPKVPG------D---DEAF---ARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIALVA--PLEEC 383 (394)
T ss_pred --CCC--EEEEEEEECCC------C---HHHH---HHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECC--CHHHH
T ss_conf --798--54899996899------9---9999---99999868999987734165545788899989999759--89999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780153|r 369 LLLCDWLR 376 (391)
Q Consensus 369 ~~L~~aLe 376 (391)
T Consensus 384 ~ea~~Rl~ 391 (394)
T TIGR03538 384 VEAAERIR 391 (394)
T ss_pred HHHHHHHH
T ss_conf 99999999