HHsearch alignment for GI: 254780153 and conserved domain: TIGR03539

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.68  E-value=3.7e-05  Score=52.22  Aligned_cols=299  Identities=16%  Similarity=0.062  Sum_probs=156.2

Q ss_pred             CCCCCCCCCC-CHHHHHHHHHHHCCCCCCC-C--HHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHHC-
Q ss_conf             8868887768-9689999863210365328-9--889999999999999996889-98579997487348999875320-
Q gi|254780153|r   14 PFFSSGPCAK-RPGWSLGILEGALLGRSHR-C--VLGKERINKAIQLTRKVLEVP-ENYRIAIVPASDTGAVEMALWSL-   87 (391)
Q Consensus        14 ~~F~pGP~~~-~p~~v~~~~~~~~l~~sHR-s--~~f~~i~~~~~~~l~~l~~~p-~~y~v~~l~GsgT~~~ea~~~nl-   87 (391)
T Consensus        24 I~L~iG~Pd~p~p~~i~~a~~~a~-~-~~~Y~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~l~~~l~  101 (357)
T TIGR03539        24 VDLSVGTPVDPVPPLIRAALAAAA-D-APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG  101 (357)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHH-C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             888799999998999999999712-4-79989984779999999999999719997995759986887999999999970


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCC--CCCCEEEEEEECCCCEEECCEE-----EECC
Q ss_conf             57897079970736888887653238763067405777657867678--5565799742024202203203-----5025
Q gi|254780153|r   88 LGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD--FDRDVVFVWNGTTSGVCVPDVG-----FIPE  160 (391)
Q Consensus        88 ~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~v~~~h~ETstGv~~~~~~-----~~~~  160 (391)
T Consensus       102 ~~pGD~Vli~~P~y~~y--~~~~~~~g~~~v~~d-------~~~~~~~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~  172 (357)
T TIGR03539       102 LGPGDTVVIPELAYPTY--EVGALLAGATPVAAD-------DPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWAR  172 (357)
T ss_pred             CCCCCEEEECCCCCCCH--HHHHHHCCCEEEECC-------CHHHCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHCC
T ss_conf             79999899788877008--999998599898238-------866679778549998999896232082889999987320


Q ss_pred             CCCCEEEEEECCHH---HHCCCC--------CCCCE-EEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCH
Q ss_conf             68614886401101---102545--------56857-999700120017665--15445677888765411445778312
Q gi|254780153|r  161 SREGLVICDATSAV---FARHID--------FNKLD-VVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKI  226 (391)
Q Consensus       161 ~~~~llivD~vSs~---g~~p~d--------~~~iD-v~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~  226 (391)
T Consensus       173 ~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~li~~l~~~~~-------  244 (357)
T TIGR03539       173 ERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN-LAGYRAGFVAGDPALVAELLTVRK-------  244 (357)
T ss_pred             CCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCC-CCCCEEEEEECCHHHHHHHHHHHH-------
T ss_conf             555899523324765358988430286453767576799961531004-556128999679999999999998-------


Q ss_pred             HHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             32001123210334786446664488999999998620103189999999977999999987479716766882003653
Q gi|254780153|r  227 FRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNT  306 (391)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~  306 (391)
T Consensus       245 ---------------~~~~~~~~-~~q~a~~~al~---~~~~~~~~~~~~~~rr~~l~~~L~~~g-~~~~~--p----~g  298 (357)
T TIGR03539       245 ---------------HAGLMVPA-PVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKAG-FRIDH--S----EA  298 (357)
T ss_pred             ---------------HCCCCCCH-HHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHCC-CEECC--C----CE
T ss_conf             ---------------56777889-99999999956---927899999999999999999998579-77626--8----80


Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHH
Q ss_conf             17898247310113734567888999998886282872665-5676750-5686158889999999
Q gi|254780153|r  307 SICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLL  370 (391)
Q Consensus       307 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~  370 (391)
T Consensus       299 ~~y~~~~~~~----~-------~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis~~~--~~e~l~e  351 (357)
T TIGR03539       299 GLYLWATRGE----D-------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--TDERIAA  351 (357)
T ss_pred             EEEEEEECCC----C-------HHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECC--CHHHHHH
T ss_conf             6999875899----9-------99999999969989947874478999979999729--9999999