HHsearch alignment for GI: 254780153 and conserved domain: TIGR03539
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.68 E-value=3.7e-05 Score=52.22 Aligned_cols=299 Identities=16% Similarity=0.062 Sum_probs=156.2
Q ss_pred CCCCCCCCCC-CHHHHHHHHHHHCCCCCCC-C--HHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHHC-
Q ss_conf 8868887768-9689999863210365328-9--889999999999999996889-98579997487348999875320-
Q gi|254780153|r 14 PFFSSGPCAK-RPGWSLGILEGALLGRSHR-C--VLGKERINKAIQLTRKVLEVP-ENYRIAIVPASDTGAVEMALWSL- 87 (391)
Q Consensus 14 ~~F~pGP~~~-~p~~v~~~~~~~~l~~sHR-s--~~f~~i~~~~~~~l~~l~~~p-~~y~v~~l~GsgT~~~ea~~~nl- 87 (391)
T Consensus 24 I~L~iG~Pd~p~p~~i~~a~~~a~-~-~~~Y~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~l~~~l~ 101 (357)
T TIGR03539 24 VDLSVGTPVDPVPPLIRAALAAAA-D-APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG 101 (357)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHH-C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 888799999998999999999712-4-79989984779999999999999719997995759986887999999999970
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCC--CCCCEEEEEEECCCCEEECCEE-----EECC
Q ss_conf 57897079970736888887653238763067405777657867678--5565799742024202203203-----5025
Q gi|254780153|r 88 LGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD--FDRDVVFVWNGTTSGVCVPDVG-----FIPE 160 (391)
Q Consensus 88 ~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~v~~~h~ETstGv~~~~~~-----~~~~ 160 (391)
T Consensus 102 ~~pGD~Vli~~P~y~~y--~~~~~~~g~~~v~~d-------~~~~~~~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~ 172 (357)
T TIGR03539 102 LGPGDTVVIPELAYPTY--EVGALLAGATPVAAD-------DPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWAR 172 (357)
T ss_pred CCCCCEEEECCCCCCCH--HHHHHHCCCEEEECC-------CHHHCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHCC
T ss_conf 79999899788877008--999998599898238-------866679778549998999896232082889999987320
Q ss_pred CCCCEEEEEECCHH---HHCCCC--------CCCCE-EEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCH
Q ss_conf 68614886401101---102545--------56857-999700120017665--15445677888765411445778312
Q gi|254780153|r 161 SREGLVICDATSAV---FARHID--------FNKLD-VVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKI 226 (391)
Q Consensus 161 ~~~~llivD~vSs~---g~~p~d--------~~~iD-v~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~ 226 (391)
T Consensus 173 ~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~li~~l~~~~~------- 244 (357)
T TIGR03539 173 ERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN-LAGYRAGFVAGDPALVAELLTVRK------- 244 (357)
T ss_pred CCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCC-CCCCEEEEEECCHHHHHHHHHHHH-------
T ss_conf 555899523324765358988430286453767576799961531004-556128999679999999999998-------
Q ss_pred HHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 32001123210334786446664488999999998620103189999999977999999987479716766882003653
Q gi|254780153|r 227 FRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNT 306 (391)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~ 306 (391)
T Consensus 245 ---------------~~~~~~~~-~~q~a~~~al~---~~~~~~~~~~~~~~rr~~l~~~L~~~g-~~~~~--p----~g 298 (357)
T TIGR03539 245 ---------------HAGLMVPA-PVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKAG-FRIDH--S----EA 298 (357)
T ss_pred ---------------HCCCCCCH-HHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHCC-CEECC--C----CE
T ss_conf ---------------56777889-99999999956---927899999999999999999998579-77626--8----80
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHH
Q ss_conf 17898247310113734567888999998886282872665-5676750-5686158889999999
Q gi|254780153|r 307 SICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLL 370 (391)
Q Consensus 307 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~ 370 (391)
T Consensus 299 ~~y~~~~~~~----~-------~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis~~~--~~e~l~e 351 (357)
T TIGR03539 299 GLYLWATRGE----D-------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--TDERIAA 351 (357)
T ss_pred EEEEEEECCC----C-------HHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECC--CHHHHHH
T ss_conf 6999875899----9-------99999999969989947874478999979999729--9999999