HHsearch alignment for GI: 254780153 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.22 E-value=1.3e-07 Score=67.72 Aligned_cols=306 Identities=12% Similarity=0.080 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHCCC-CCCCCH---HHHHHHHHHHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 68999986321036-532898---8999999999999999688998-579997487348999875320578970799707
Q gi|254780153|r 25 PGWSLGILEGALLG-RSHRCV---LGKERINKAIQLTRKVLEVPEN-YRIAIVPASDTGAVEMALWSLLGYRGVDVLAWE 99 (391)
Q Consensus 25 p~~v~~~~~~~~l~-~sHRs~---~f~~i~~~~~~~l~~l~~~p~~-y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g 99 (391)
T Consensus 44 p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~~pGD~Vli~~P 123 (383)
T TIGR03540 44 PKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDP 123 (383)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99999999999828887654998784999999999999986898996766998478259999999996689898998789
Q ss_pred CHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCHHHCCC-----CCCEEEEEEECCCCEEECCEE-----EECCCCCCEEE
Q ss_conf 368888876532387630674--057776578676785-----565799742024202203203-----50256861488
Q gi|254780153|r 100 SFGLGWMSDIRQLSLQDVREF--TAPYGSLPDFSKVDF-----DRDVVFVWNGTTSGVCVPDVG-----FIPESREGLVI 167 (391)
Q Consensus 100 ~~~~r~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~-----~~~v~~~h~ETstGv~~~~~~-----~~~~~~~~lli 167 (391)
T Consensus 124 ~Y~~y-~~~~~~~g-~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iI 201 (383)
T TIGR03540 124 GYPVY-RIGTLFAG-GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CCCCH-HHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 86016-99999719-85899613357798579999987452377499989998970701210222201001245540576
Q ss_pred EEECCHH---HH-CCC-----C-CCCCEEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf 6401101---10-254-----5-56857999700120017665--15445677888765411445778312320011232
Q gi|254780153|r 168 CDATSAV---FA-RHI-----D-FNKLDVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRV 235 (391)
Q Consensus 168 vD~vSs~---g~-~p~-----d-~~~iDv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T Consensus 202 sDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~i~~~~l~~~~~~~~~---------------- 264 (383)
T TIGR03540 202 HDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN-MTGWRIGMAVGNADLIAGLGKVKT---------------- 264 (383)
T ss_pred CCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCC-CCCCEEEEECCCHHHHHHHHHHHH----------------
T ss_conf 110255530389999771113665542577630235447-887348962289999999999975----------------
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 10334786446664488999999998620103189999999977999999987479716766882003653178982473
Q gi|254780153|r 236 MEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDS 315 (391)
Q Consensus 236 ~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~ 315 (391)
T Consensus 265 ------~~~~~~~-~~~q~a~~~al~~~~--~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~~--p~--g~~~~w~~~~~~ 330 (383)
T TIGR03540 265 ------NVDSGVF-QAIQYAAIAALNGPQ--DVVKEIRKIYQRRRDLLLEALKKIG-IDVEK--PK--ATFYVWVPVPEG 330 (383)
T ss_pred ------HHCCCCC-HHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHCC-CEEEC--CC--CEEEEEEECCCC
T ss_conf ------5135676-599999999985919--9999999999999999999998769-87735--78--057998989999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 10113734567888999998-886282872665-5676750-5686158889999999999999
Q gi|254780153|r 316 DIASLDINSQKSFCKSMLSF-LEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLLLCDWLR 376 (391)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~L~~aLe 376 (391)
T Consensus 331 ----~~-------~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~~--~~~e~l~eal~RL~ 381 (383)
T TIGR03540 331 ----YT-------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIK 381 (383)
T ss_pred ----CC-------HHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEE--CCHHHHHHHHHHHH
T ss_conf ----89-------89999999983999998885328899886999986--99999999999984