HHsearch alignment for GI: 254780153 and conserved domain: TIGR03540

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.22  E-value=1.3e-07  Score=67.72  Aligned_cols=306  Identities=12%  Similarity=0.080  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHCCC-CCCCCH---HHHHHHHHHHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             68999986321036-532898---8999999999999999688998-579997487348999875320578970799707
Q gi|254780153|r   25 PGWSLGILEGALLG-RSHRCV---LGKERINKAIQLTRKVLEVPEN-YRIAIVPASDTGAVEMALWSLLGYRGVDVLAWE   99 (391)
Q Consensus        25 p~~v~~~~~~~~l~-~sHRs~---~f~~i~~~~~~~l~~l~~~p~~-y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g   99 (391)
T Consensus        44 p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~~pGD~Vli~~P  123 (383)
T TIGR03540        44 PKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDP  123 (383)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99999999999828887654998784999999999999986898996766998478259999999996689898998789


Q ss_pred             CHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCHHHCCC-----CCCEEEEEEECCCCEEECCEE-----EECCCCCCEEE
Q ss_conf             368888876532387630674--057776578676785-----565799742024202203203-----50256861488
Q gi|254780153|r  100 SFGLGWMSDIRQLSLQDVREF--TAPYGSLPDFSKVDF-----DRDVVFVWNGTTSGVCVPDVG-----FIPESREGLVI  167 (391)
Q Consensus       100 ~~~~r~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~-----~~~v~~~h~ETstGv~~~~~~-----~~~~~~~~lli  167 (391)
T Consensus       124 ~Y~~y-~~~~~~~g-~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iI  201 (383)
T TIGR03540       124 GYPVY-RIGTLFAG-GEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVC  201 (383)
T ss_pred             CCCCH-HHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf             86016-99999719-85899613357798579999987452377499989998970701210222201001245540576


Q ss_pred             EEECCHH---HH-CCC-----C-CCCCEEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHH
Q ss_conf             6401101---10-254-----5-56857999700120017665--15445677888765411445778312320011232
Q gi|254780153|r  168 CDATSAV---FA-RHI-----D-FNKLDVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRV  235 (391)
Q Consensus       168 vD~vSs~---g~-~p~-----d-~~~iDv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~  235 (391)
T Consensus       202 sDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~i~~~~l~~~~~~~~~----------------  264 (383)
T TIGR03540       202 HDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN-MTGWRIGMAVGNADLIAGLGKVKT----------------  264 (383)
T ss_pred             CCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCC-CCCCEEEEECCCHHHHHHHHHHHH----------------
T ss_conf             110255530389999771113665542577630235447-887348962289999999999975----------------


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             10334786446664488999999998620103189999999977999999987479716766882003653178982473
Q gi|254780153|r  236 MEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDS  315 (391)
Q Consensus       236 ~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~  315 (391)
T Consensus       265 ------~~~~~~~-~~~q~a~~~al~~~~--~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~~--p~--g~~~~w~~~~~~  330 (383)
T TIGR03540       265 ------NVDSGVF-QAIQYAAIAALNGPQ--DVVKEIRKIYQRRRDLLLEALKKIG-IDVEK--PK--ATFYVWVPVPEG  330 (383)
T ss_pred             ------HHCCCCC-HHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHCC-CEEEC--CC--CEEEEEEECCCC
T ss_conf             ------5135676-599999999985919--9999999999999999999998769-87735--78--057998989999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             10113734567888999998-886282872665-5676750-5686158889999999999999
Q gi|254780153|r  316 DIASLDINSQKSFCKSMLSF-LEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLLLCDWLR  376 (391)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~L~~aLe  376 (391)
T Consensus       331 ----~~-------~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~~~--~~~e~l~eal~RL~  381 (383)
T TIGR03540       331 ----YT-------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIK  381 (383)
T ss_pred             ----CC-------HHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEE--CCHHHHHHHHHHHH
T ss_conf             ----89-------89999999983999998885328899886999986--99999999999984