HHsearch alignment for GI: 254780153 and conserved domain: TIGR03542

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.42  E-value=6.6e-05  Score=50.58  Aligned_cols=326  Identities=13%  Similarity=0.081  Sum_probs=151.3

Q ss_pred             CCCCCCC-CCCCHHHHHHHHHHHCCC--C--CCCCHHHHHHHHHHHHHHH-HHHCCC-CCCEEEEECCCCHHHHHHHHHH
Q ss_conf             8868887-768968999986321036--5--3289889999999999999-996889-9857999748734899987532
Q gi|254780153|r   14 PFFSSGP-CAKRPGWSLGILEGALLG--R--SHRCVLGKERINKAIQLTR-KVLEVP-ENYRIAIVPASDTGAVEMALWS   86 (391)
Q Consensus        14 ~~F~pGP-~~~~p~~v~~~~~~~~l~--~--sHRs~~f~~i~~~~~~~l~-~l~~~p-~~y~v~~l~GsgT~~~ea~~~n   86 (391)
T Consensus        36 I~L~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~gY~~~~G~~~LReaia~~~~~~~~~~d~I~v-t~Ga~~~l~~-l~a  113 (402)
T TIGR03542        36 IRLGIGDTTQPLPASVIEAFHEAVDELASEETYRGYGPEQGLPALREAIAENDYRGRISPEEIFI-SDGAKCDIGR-LQS  113 (402)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEE-CCCCHHHHHH-HHH
T ss_conf             58989998999899999999999971224678677797406499999999997568998899677-7782999999-999


Q ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHCCCCCEE-EEECC------------CCCCCCHHHCCCCCCEEEEEEECCCCEEEC
Q ss_conf             05789707997073688888765323876306-74057------------776578676785565799742024202203
Q gi|254780153|r   87 LLGYRGVDVLAWESFGLGWMSDIRQLSLQDVR-EFTAP------------YGSLPDFSKVDFDRDVVFVWNGTTSGVCVP  153 (391)
Q Consensus        87 l~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~-~~~~~------------~g~~~~~~~~~~~~~v~~~h~ETstGv~~~  153 (391)
T Consensus       114 ~l~pGD~Vii~~P~y~~Y--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ktk~iiln~P~NPTG~v~s  191 (402)
T TIGR03542       114 IFGSDNTVAVQDPVYPAY--VDTAVMTGRAGFADDTGQYRGIVYLPCTKENGFIPELPEERKIDIIYLCSPNNPTGTVLT  191 (402)
T ss_pred             HHCCCCEEEEECCCCCCH--HHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             839999899838888157--999998599530135665567256767624385722234557359998999798875689


Q ss_pred             CEE-----EECCCCCCEEEEEECCHH-HHC---CC------CCCCCEEEEECCHHCCCCCCCC--EEEEECHHHHHHHHH
Q ss_conf             203-----502568614886401101-102---54------5568579997001200176651--544567788876541
Q gi|254780153|r  154 DVG-----FIPESREGLVICDATSAV-FAR---HI------DFNKLDVVTFSAQKVLGGEAGF--GIIILSPASVERLEK  216 (391)
Q Consensus       154 ~~~-----~~~~~~~~llivD~vSs~-g~~---p~------d~~~iDv~~a~sQK~l~~ppGl--~~v~~s~~al~~~~~  216 (391)
T Consensus       192 ~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s~~~~~~~~~~~I~i~S~SK~~~-m~G~RiG~~i~p~~l~~~~~~  270 (402)
T TIGR03542       192 KEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHSIYEIEGAKECAIEINSFSKSLG-FTGVRLGWTVVPKELTYADGH  270 (402)
T ss_pred             HHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCC-CCCCCHHHEECCHHHHHHHHH
T ss_conf             9999999999875070796022288761689876201113665213673167624027-834054021125877542279


Q ss_pred             CCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             14457783123200112321033478644666448899999999862010318999999997799999998747971676
Q gi|254780153|r  217 YVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENL  296 (391)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~  296 (391)
T Consensus       271 ~-------~~~~~~~--------~~~~~~~~~~~~~q~a~~aal~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~~~~  333 (402)
T TIGR03542       271 S-------VIQDWER--------RLCTTFNGASYPVQRAAEAAYAGEGLQ-PILEAISYYMENARILREALEAAG-FKVY  333 (402)
T ss_pred             H-------HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf             9-------9999999--------987625775599999999997378859-999999999999999999887569-5760


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-HHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHHHHH
Q ss_conf             688200365317898247310113734567888999998-886282872665-5676750-5686158889999999999
Q gi|254780153|r  297 AVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSF-LEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLLLCD  373 (391)
Q Consensus       297 ~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~L~~  373 (391)
T Consensus       334 ~--~~--ga~yl~~~~~~~----~~-------~~~~~~~ll~e~~V~vvPG~~FG~~g~g~vRls~a~--~~e~l~ea~~  396 (402)
T TIGR03542       334 G--GE--NAPYLWVKTPEG----IS-------SWDFFDFLLYQYHIVGTPGSGFGSSGEGFVRFSAFG--KRENIVAACE  396 (402)
T ss_pred             C--CC--CCEEEEEECCCC----CC-------HHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEEC--CHHHHHHHHH
T ss_conf             7--99--734897878999----89-------899999999859999976447689998969999729--9999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780153|r  374 WLRWV  378 (391)
Q Consensus       374 aLe~~  378 (391)
T Consensus       397 Rl~~~  401 (402)
T TIGR03542       397 RIKHA  401 (402)
T ss_pred             HHHHH
T ss_conf             99975