HHsearch alignment for GI: 254780153 and conserved domain: TIGR03542
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.42 E-value=6.6e-05 Score=50.58 Aligned_cols=326 Identities=13% Similarity=0.081 Sum_probs=151.3
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHCCC--C--CCCCHHHHHHHHHHHHHHH-HHHCCC-CCCEEEEECCCCHHHHHHHHHH
Q ss_conf 8868887-768968999986321036--5--3289889999999999999-996889-9857999748734899987532
Q gi|254780153|r 14 PFFSSGP-CAKRPGWSLGILEGALLG--R--SHRCVLGKERINKAIQLTR-KVLEVP-ENYRIAIVPASDTGAVEMALWS 86 (391)
Q Consensus 14 ~~F~pGP-~~~~p~~v~~~~~~~~l~--~--sHRs~~f~~i~~~~~~~l~-~l~~~p-~~y~v~~l~GsgT~~~ea~~~n 86 (391)
T Consensus 36 I~L~iGePdf~~P~~i~~a~~~ai~~~~~~~~~~gY~~~~G~~~LReaia~~~~~~~~~~d~I~v-t~Ga~~~l~~-l~a 113 (402)
T TIGR03542 36 IRLGIGDTTQPLPASVIEAFHEAVDELASEETYRGYGPEQGLPALREAIAENDYRGRISPEEIFI-SDGAKCDIGR-LQS 113 (402)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEE-CCCCHHHHHH-HHH
T ss_conf 58989998999899999999999971224678677797406499999999997568998899677-7782999999-999
Q ss_pred CCCCCCEEEEEECCHHHHHHHHHHHCCCCCEE-EEECC------------CCCCCCHHHCCCCCCEEEEEEECCCCEEEC
Q ss_conf 05789707997073688888765323876306-74057------------776578676785565799742024202203
Q gi|254780153|r 87 LLGYRGVDVLAWESFGLGWMSDIRQLSLQDVR-EFTAP------------YGSLPDFSKVDFDRDVVFVWNGTTSGVCVP 153 (391)
Q Consensus 87 l~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~-~~~~~------------~g~~~~~~~~~~~~~v~~~h~ETstGv~~~ 153 (391)
T Consensus 114 ~l~pGD~Vii~~P~y~~Y--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ktk~iiln~P~NPTG~v~s 191 (402)
T TIGR03542 114 IFGSDNTVAVQDPVYPAY--VDTAVMTGRAGFADDTGQYRGIVYLPCTKENGFIPELPEERKIDIIYLCSPNNPTGTVLT 191 (402)
T ss_pred HHCCCCEEEEECCCCCCH--HHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 839999899838888157--999998599530135665567256767624385722234557359998999798875689
Q ss_pred CEE-----EECCCCCCEEEEEECCHH-HHC---CC------CCCCCEEEEECCHHCCCCCCCC--EEEEECHHHHHHHHH
Q ss_conf 203-----502568614886401101-102---54------5568579997001200176651--544567788876541
Q gi|254780153|r 154 DVG-----FIPESREGLVICDATSAV-FAR---HI------DFNKLDVVTFSAQKVLGGEAGF--GIIILSPASVERLEK 216 (391)
Q Consensus 154 ~~~-----~~~~~~~~llivD~vSs~-g~~---p~------d~~~iDv~~a~sQK~l~~ppGl--~~v~~s~~al~~~~~ 216 (391)
T Consensus 192 ~eel~~i~~la~~~~i~iIsDEiY~~~~~~~~~~~s~~~~~~~~~~~I~i~S~SK~~~-m~G~RiG~~i~p~~l~~~~~~ 270 (402)
T TIGR03542 192 KEQLKELVDYANAHGSLILFDAAYSAFISDPSIPHSIYEIEGAKECAIEINSFSKSLG-FTGVRLGWTVVPKELTYADGH 270 (402)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCC-CCCCCHHHEECCHHHHHHHHH
T ss_conf 9999999999875070796022288761689876201113665213673167624027-834054021125877542279
Q ss_pred CCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 14457783123200112321033478644666448899999999862010318999999997799999998747971676
Q gi|254780153|r 217 YVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENL 296 (391)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~ 296 (391)
T Consensus 271 ~-------~~~~~~~--------~~~~~~~~~~~~~q~a~~aal~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~~~~ 333 (402)
T TIGR03542 271 S-------VIQDWER--------RLCTTFNGASYPVQRAAEAAYAGEGLQ-PILEAISYYMENARILREALEAAG-FKVY 333 (402)
T ss_pred H-------HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 9-------9999999--------987625775599999999997378859-999999999999999999887569-5760
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-HHHCCEEECCCC-CCCCCCE-EEEECCCCCCHHHHHHHHH
Q ss_conf 688200365317898247310113734567888999998-886282872665-5676750-5686158889999999999
Q gi|254780153|r 297 AVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSF-LEKEEIAYDIGS-YRDAPLG-LRVWVGVTVEKEDLLLLCD 373 (391)
Q Consensus 297 ~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~-~r~~~~~-~RIg~~g~i~~~dv~~L~~ 373 (391)
T Consensus 334 ~--~~--ga~yl~~~~~~~----~~-------~~~~~~~ll~e~~V~vvPG~~FG~~g~g~vRls~a~--~~e~l~ea~~ 396 (402)
T TIGR03542 334 G--GE--NAPYLWVKTPEG----IS-------SWDFFDFLLYQYHIVGTPGSGFGSSGEGFVRFSAFG--KRENIVAACE 396 (402)
T ss_pred C--CC--CCEEEEEECCCC----CC-------HHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEEC--CHHHHHHHHH
T ss_conf 7--99--734897878999----89-------899999999859999976447689998969999729--9999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780153|r 374 WLRWV 378 (391)
Q Consensus 374 aLe~~ 378 (391)
T Consensus 397 Rl~~~ 401 (402)
T TIGR03542 397 RIKHA 401 (402)
T ss_pred HHHHH
T ss_conf 99975