HHsearch alignment for GI: 254780153 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.09 E-value=1.9e-07 Score=66.78 Aligned_cols=319 Identities=14% Similarity=0.054 Sum_probs=170.6
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHC-CCCCCEEEEEECCHHHHHH
Q ss_conf 999863210365328988999999999999999688998579997487348999875320-5789707997073688888
Q gi|254780153|r 28 SLGILEGALLGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSL-LGYRGVDVLAWESFGLGWM 106 (391)
Q Consensus 28 v~~~~~~~~l~~sHRs~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl-~~~~~~~~~~~g~~~~r~~ 106 (391)
T Consensus 16 v~~~l~s~~~~--~-----G~~v~~fE~~~~~~~g~k~---~v~-~~sgT~AL~lal~al~~~~gdeVivp~~tf~at-~ 83 (380)
T TIGR03588 16 VVEVLKSDFLT--Q-----GPTVPAFEEALAEYVGAKY---AVA-FNSATSALHIACLALGVGPGDEVWTTPITFVAT-A 83 (380)
T ss_pred HHHHHHCCCCC--C-----CHHHHHHHHHHHHHHCCCE---EEE-ECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHH-H
T ss_conf 99998479866--8-----9769999999999978594---999-758899999999984999989999678530886-7
Q ss_pred HHHHHCCCCCEEEEE-CCCCCCCCHHHCC---------CCCCEEEEEEECCCCEEECCE--EEECCCCCCEEEEEECCHH
Q ss_conf 765323876306740-5777657867678---------556579974202420220320--3502568614886401101
Q gi|254780153|r 107 SDIRQLSLQDVREFT-APYGSLPDFSKVD---------FDRDVVFVWNGTTSGVCVPDV--GFIPESREGLVICDATSAV 174 (391)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~---------~~~~v~~~h~ETstGv~~~~~--~~~~~~~~~llivD~vSs~ 174 (391)
T Consensus 84 ~ai~~~G-a~pvf~Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~vh~---~G~~~d~~~i~~ia~~~~i~lIEDaA~a~ 159 (380)
T TIGR03588 84 NCALYCG-AKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDF---AGKSVDMQAIAALAKKHGLKIIEDASHAL 159 (380)
T ss_pred HHHHHCC-CEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEECC---CCEECCHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9999879-9689984410001489888777776436777259999489---85434899999999986988999880011
Q ss_pred HHCCCC-------CCCCEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCC--HHHHHHCC-CCCCCC
Q ss_conf 102545-------56857999700120017665154456778887654114457783123200--11232103-347864
Q gi|254780153|r 175 FARHID-------FNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMV--KGGRVMEG-LFCGET 244 (391)
Q Consensus 175 g~~p~d-------~~~iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~ 244 (391)
T Consensus 160 Ga~~~gk~~Gs~~~gd~~~fSF~~~K~ittGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~~~~~~~y~~~~~G~N 239 (380)
T TIGR03588 160 GAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFN 239 (380)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEECCCCC
T ss_conf 57757876566443524677335555577788539996999999999999976967773100146788740366347666
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCCHH
Q ss_conf 466644889999999986201031899999999779999999874797167668820036-5317898247310113734
Q gi|254780153|r 245 INTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRS-NTSICMKIVDSDIASLDIN 323 (391)
Q Consensus 245 ~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS-~~~v~~~~~d~~~~~~~~~ 323 (391)
T Consensus 240 ~rmseiqAA-ig~~qL~------~ld~~~~~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y~i~~~~~~~~----- 307 (380)
T TIGR03588 240 YRMTDIQAA-LGLSQLK------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGC----- 307 (380)
T ss_pred CCCCHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC-----
T ss_conf 543124148-7688888------8999999999999999996478998356746999831568999998266731-----
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCC--------CCC-------------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 567888999998886282872665--------567-------------6750568615888999999999999999
Q gi|254780153|r 324 SQKSFCKSMLSFLEKEEIAYDIGS--------YRD-------------APLGLRVWVGVTVEKEDLLLLCDWLRWV 378 (391)
Q Consensus 324 ~~~~~~~~~~~~l~~~g~~~~~~~--------~r~-------------~~~~~RIg~~g~i~~~dv~~L~~aLe~~ 378 (391)
T Consensus 308 ----~r~~l~~~L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik~v 379 (380)
T TIGR03588 308 ----TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred ----CHHHHHHHHHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ----499999999977998567230442299888278879987999998497989799998999999999999986