HHsearch alignment for GI: 254780153 and conserved domain: cd00378
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.12 E-value=7.8e-08 Score=69.20 Aligned_cols=313 Identities=17% Similarity=0.182 Sum_probs=184.5
Q ss_pred CCHHHHHHHHHHHCCCCC------CC----CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 896899998632103653------28----98899999999999999968899857999748734899987532057897
Q gi|254780153|r 23 KRPGWSLGILEGALLGRS------HR----CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRG 92 (391)
Q Consensus 23 ~~p~~v~~~~~~~~l~~s------HR----s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~ 92 (391)
T Consensus 31 ~S~~-v~~a~gS~ltnkYaeG~pg~Ryy~G~~~iD~iE~la~~rak~LF~a~~---anVqp~SGs~AN~av~~all~pGD 106 (402)
T cd00378 31 TSPA-VMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEY---ANVQPHSGSQANLAVYFALLEPGD 106 (402)
T ss_pred CCHH-HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7999-999856730154768899864667662599999999999999838987---475878739999999999727999
Q ss_pred EEEEEE---C-CHHHHHHHHHHHCCCCCEEEEECCC-----CCCCCHHHCCC-----CCCEEEEEEECCCCEEEC--CEE
Q ss_conf 079970---7-3688888765323876306740577-----76578676785-----565799742024202203--203
Q gi|254780153|r 93 VDVLAW---E-SFGLGWMSDIRQLSLQDVREFTAPY-----GSLPDFSKVDF-----DRDVVFVWNGTTSGVCVP--DVG 156 (391)
Q Consensus 93 ~~~~~~---g-~~~~r~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~-----~~~v~~~h~ETstGv~~~--~~~ 156 (391)
T Consensus 107 ~il~l~l~~GGHltHg~~~~v~~~g-~~~--~~~~Y~vd~~~~~IDyd~~~~~a~~~kPklIi~G~-S~y~r~~d~~~~r 182 (402)
T cd00378 107 TIMGLDLSHGGHLTHGSFTKVSASG-KLF--ESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGA-SAYPRPIDFKRFR 182 (402)
T ss_pred EEEEECCCCCCCCCCCCCCCCEEEE-EEE--EEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECC-CCCCCCCCHHHHH
T ss_conf 8998664347775667787720213-567--88963245565871899999999865996999777-1565655889999
Q ss_pred EECCCCCCEEEEEECCHHH-----HCCCCCCCCEEEEECCHHCCCCCCCCEEEEECH-HHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 5025686148864011011-----025455685799970012001766515445677-8887654114457783123200
Q gi|254780153|r 157 FIPESREGLVICDATSAVF-----ARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSP-ASVERLEKYVPSWPLPKIFRMV 230 (391)
Q Consensus 157 ~~~~~~~~llivD~vSs~g-----~~p~d~~~iDv~~a~sQK~l~~ppGl~~v~~s~-~al~~~~~~~~~~~~~~~~~~~ 230 (391)
T Consensus 183 eIad~vgA~l~~D~aHi~GLIA~g~~p~Pl~~ADvvt~tTHKTlrGPrG-GiIl~~~~~~~~kId~av----f------- 250 (402)
T cd00378 183 EIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAV----F------- 250 (402)
T ss_pred HHHHHCCCEEEEEHHHHHHHEECCCCCCCCCCCEEEECCCCCCCCCCCC-EEEEECCHHHHHHHHHHH----C-------
T ss_conf 9998709889855012344303565799768765774464345789984-089954278998854650----9-------
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11232103347864466644889999999986201031899999999779999999874797167668820036531789
Q gi|254780153|r 231 KGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICM 310 (391)
Q Consensus 231 ~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~ 310 (391)
T Consensus 251 -----------Pg~qggph~h~iAa~Aval~Ea~~~~-f~~Ya~qVv~NAkaLA~~L~~~G-~~vv~g--gTd~H~v-lv 314 (402)
T cd00378 251 -----------PGLQGGPHLHVIAAKAVALKEALEPE-FKAYAKQVVENAKALAEALKERG-FKVVSG--GTDNHLV-LV 314 (402)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHCC-CEEECC--CCCCCEE-EE
T ss_conf -----------86446745667899999999986866-89999999999999999998589-479748--9988779-99
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC----CC--CCCCEEEEECCC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 8247310113734567888999998886282872665----56--767505686158----8899999999999999999
Q gi|254780153|r 311 KIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS----YR--DAPLGLRVWVGV----TVEKEDLLLLCDWLRWVFY 380 (391)
Q Consensus 311 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----~r--~~~~~~RIg~~g----~i~~~dv~~L~~aLe~~~~ 380 (391)
T Consensus 315 d~~~~g~-------~---G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~sGiRiGT~a~T~rG~~e~em~~ia~lI~~~l~ 384 (402)
T cd00378 315 DLRPKGI-------T---GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred ECCCCCC-------C---HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6664568-------9---99999999984908754748899999999976164778998589988999999999999981
Q ss_pred H
Q ss_conf 9
Q gi|254780153|r 381 F 381 (391)
Q Consensus 381 ~ 381 (391)
T Consensus 385 ~ 385 (402)
T cd00378 385 D 385 (402)
T ss_pred C
T ss_conf 7