HHsearch alignment for GI: 254780153 and conserved domain: cd00609
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.21 E-value=1.6e-07 Score=67.25 Aligned_cols=287 Identities=16% Similarity=0.087 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE-CCC
Q ss_conf 9999999999999996889985799974873489998753205789707997073688888765323876306740-577
Q gi|254780153|r 46 GKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFT-APY 124 (391)
Q Consensus 46 f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~-~~~ 124 (391)
T Consensus 38 ~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~-~~~~~~~g-~~~~~v~~~~~ 115 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGY-EAAARLAG-AEVVPVPLDEE 115 (350)
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHCC-CCCCCCCCCCC
T ss_conf 19999999999878738997479789926999999999999808989899947986306-99999829-94125565600
Q ss_pred C-CCCCHHHC-----CCCCCEEEEEEECCCCEEECCEE-----EECCCCCCEEEEEECCHHH---HCCC------CCCCC
Q ss_conf 7-65786767-----85565799742024202203203-----5025686148864011011---0254------55685
Q gi|254780153|r 125 G-SLPDFSKV-----DFDRDVVFVWNGTTSGVCVPDVG-----FIPESREGLVICDATSAVF---ARHI------DFNKL 184 (391)
Q Consensus 125 g-~~~~~~~~-----~~~~~v~~~h~ETstGv~~~~~~-----~~~~~~~~llivD~vSs~g---~~p~------d~~~i 184 (391)
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 195 (350)
T cd00609 116 GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER 195 (350)
T ss_pred CCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHCCCCCE
T ss_conf 38676689999856889978985699497254633788989999986238626885341220369988896785577980
Q ss_pred EEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7999700120017665--15445677888765411445778312320011232103347864466644889999999986
Q gi|254780153|r 185 DVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLW 262 (391)
Q Consensus 185 Dv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~ 262 (391)
T Consensus 196 ~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~q~~~~~~l~~ 252 (350)
T cd00609 196 VIVLRSFSKTFG-LPGLRIGYLIAPPEELLERLKKL----------------------LPYTTSGPSTLSQAAAAAALDD 252 (350)
T ss_pred EEEEECCCCCCC-CCCCCEEEEEECHHHHHHHHHHH----------------------CCCCCCCCCHHHHHHHHHHHHC
T ss_conf 899911723037-94537799998889999999862----------------------4214678987999999999868
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 20103189999999977999999987479716766882003653178982473101137345678889999988862828
Q gi|254780153|r 263 LKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIA 342 (391)
Q Consensus 263 i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 342 (391)
T Consensus 253 ~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--p~--~g~f~~~~~~~~~--------~---~~~~~~~l~~~gv~ 315 (350)
T cd00609 253 GE--EHLEELRERYRRRRDALLEALKELGPLVVVK--PS--GGFFLWLDLPEGD--------D---EEFLERLLLEAGVV 315 (350)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC--CC--CCEEEEEECCCCC--------H---HHHHHHHHHHCCEE
T ss_conf 29--9999999999999999999998579961207--99--5539989899998--------2---99999999979999
Q ss_pred ECCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7266556--767505686158889999999999999
Q gi|254780153|r 343 YDIGSYR--DAPLGLRVWVGVTVEKEDLLLLCDWLR 376 (391)
Q Consensus 343 ~~~~~~r--~~~~~~RIg~~g~i~~~dv~~L~~aLe 376 (391)
T Consensus 316 v~~g~~f~~~~~~~iRl~~~~~--~~~~~~~~~rl~ 349 (350)
T cd00609 316 VRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred EEECHHHCCCCCCEEEEEECCC--HHHHHHHHHHHC
T ss_conf 9924564889989799996398--999999999857