HHsearch alignment for GI: 254780153 and conserved domain: cd00609

>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.21  E-value=1.6e-07  Score=67.25  Aligned_cols=287  Identities=16%  Similarity=0.087  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEE-CCC
Q ss_conf             9999999999999996889985799974873489998753205789707997073688888765323876306740-577
Q gi|254780153|r   46 GKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFT-APY  124 (391)
Q Consensus        46 f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~-~~~  124 (391)
T Consensus        38 ~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~-~~~~~~~g-~~~~~v~~~~~  115 (350)
T cd00609          38 LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGY-EAAARLAG-AEVVPVPLDEE  115 (350)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHCC-CCCCCCCCCCC
T ss_conf             19999999999878738997479789926999999999999808989899947986306-99999829-94125565600


Q ss_pred             C-CCCCHHHC-----CCCCCEEEEEEECCCCEEECCEE-----EECCCCCCEEEEEECCHHH---HCCC------CCCCC
Q ss_conf             7-65786767-----85565799742024202203203-----5025686148864011011---0254------55685
Q gi|254780153|r  125 G-SLPDFSKV-----DFDRDVVFVWNGTTSGVCVPDVG-----FIPESREGLVICDATSAVF---ARHI------DFNKL  184 (391)
Q Consensus       125 g-~~~~~~~~-----~~~~~v~~~h~ETstGv~~~~~~-----~~~~~~~~llivD~vSs~g---~~p~------d~~~i  184 (391)
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  195 (350)
T cd00609         116 GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER  195 (350)
T ss_pred             CCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHCCCCCE
T ss_conf             38676689999856889978985699497254633788989999986238626885341220369988896785577980


Q ss_pred             EEEEECCHHCCCCCCC--CEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             7999700120017665--15445677888765411445778312320011232103347864466644889999999986
Q gi|254780153|r  185 DVVTFSAQKVLGGEAG--FGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLW  262 (391)
Q Consensus       185 Dv~~a~sQK~l~~ppG--l~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~  262 (391)
T Consensus       196 ~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~q~~~~~~l~~  252 (350)
T cd00609         196 VIVLRSFSKTFG-LPGLRIGYLIAPPEELLERLKKL----------------------LPYTTSGPSTLSQAAAAAALDD  252 (350)
T ss_pred             EEEEECCCCCCC-CCCCCEEEEEECHHHHHHHHHHH----------------------CCCCCCCCCHHHHHHHHHHHHC
T ss_conf             899911723037-94537799998889999999862----------------------4214678987999999999868


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             20103189999999977999999987479716766882003653178982473101137345678889999988862828
Q gi|254780153|r  263 LKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIA  342 (391)
Q Consensus       263 i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~  342 (391)
T Consensus       253 ~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--p~--~g~f~~~~~~~~~--------~---~~~~~~~l~~~gv~  315 (350)
T cd00609         253 GE--EHLEELRERYRRRRDALLEALKELGPLVVVK--PS--GGFFLWLDLPEGD--------D---EEFLERLLLEAGVV  315 (350)
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC--CC--CCEEEEEECCCCC--------H---HHHHHHHHHHCCEE
T ss_conf             29--9999999999999999999998579961207--99--5539989899998--------2---99999999979999


Q ss_pred             ECCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             7266556--767505686158889999999999999
Q gi|254780153|r  343 YDIGSYR--DAPLGLRVWVGVTVEKEDLLLLCDWLR  376 (391)
Q Consensus       343 ~~~~~~r--~~~~~~RIg~~g~i~~~dv~~L~~aLe  376 (391)
T Consensus       316 v~~g~~f~~~~~~~iRl~~~~~--~~~~~~~~~rl~  349 (350)
T cd00609         316 VRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             EEECHHHCCCCCCEEEEEECCC--HHHHHHHHHHHC
T ss_conf             9924564889989799996398--999999999857