HHsearch alignment for GI: 254780153 and conserved domain: cd00613

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.96  E-value=2.2e-06  Score=60.01  Aligned_cols=327  Identities=16%  Similarity=0.015  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHH-CCCCCCC------CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCC---CCEE
Q ss_conf             68999986321-0365328------988999999999999999688998579997487348999875320578---9707
Q gi|254780153|r   25 PGWSLGILEGA-LLGRSHR------CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGY---RGVD   94 (391)
Q Consensus        25 p~~v~~~~~~~-~l~~sHR------s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~---~~~~   94 (391)
T Consensus        35 p~~v~~~~~r~ef~-t~ytpyq~E~sQG~Lq~~~e~Qs~i~eLtGmdv~--naSl~d~a~A~aEa~~ma~~~~~~~r~~v  111 (398)
T cd00613          35 PAVIKRNILENEFY-TAYTPYQPEISQGRLQALFELQTMLCELTGMDVA--NASLQDEATAAAEAAGLAAIRAYHKRNKV  111 (398)
T ss_pred             HHHHHHHHCHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             88989873867671-4699989688699999999999999998688835--63268767799999999999862689989


Q ss_pred             EEEECCHHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHHCC----CCCCEEEEEEECCCCEEECC-E--EEECCCCCCE
Q ss_conf             99707368888876--53238763067405777657867678----55657997420242022032-0--3502568614
Q gi|254780153|r   95 VLAWESFGLGWMSD--IRQLSLQDVREFTAPYGSLPDFSKVD----FDRDVVFVWNGTTSGVCVPD-V--GFIPESREGL  165 (391)
Q Consensus        95 ~~~~g~~~~r~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~v~~~h~ETstGv~~~~-~--~~~~~~~~~l  165 (391)
T Consensus       112 lv~~~~hp~~~~v~~t~~~~~g~~i~~v~~~~~G~~d~~~l~~~~~~~~a~v~v~~Pn~~G~~e~~~~~i~~~~h~~gal  191 (398)
T cd00613         112 LVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPNTLGVFEDLIKEIADIAHSAGAL  191 (398)
T ss_pred             EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHCCCE
T ss_conf             97787780369999998612586589942666777465888875078859999527999627851999999999875986


Q ss_pred             EEEEECC-HHHHCC-CCCCCCEEEEECCHH-----CCCCCCCCEEEEECHHHHHHHHHCCCC------CCCCCHHHCCHH
Q ss_conf             8864011-011025-455685799970012-----001766515445677888765411445------778312320011
Q gi|254780153|r  166 VICDATS-AVFARH-IDFNKLDVVTFSAQK-----VLGGEAGFGIIILSPASVERLEKYVPS------WPLPKIFRMVKG  232 (391)
Q Consensus       166 livD~vS-s~g~~p-~d~~~iDv~~a~sQK-----~l~~ppGl~~v~~s~~al~~~~~~~~~------~~~~~~~~~~~~  232 (391)
T Consensus       192 ~~~~~~~~~l~~l~~Pg~~GaDI~~g~~q~~g~P~~~GG-P~~G~~a~~~~l~r~lPgrivg~t~D~~G~~~~~ltlqtr  270 (398)
T cd00613         192 VYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGG-PGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTR  270 (398)
T ss_pred             EEEEECCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCC
T ss_conf             999744035315557100478779852511466566688-7443266799877358998565047888874215441354


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             2321033478644666448899999--99986201031899999999779999999874797167668820036531789
Q gi|254780153|r  233 GRVMEGLFCGETINTPSLLCIEDYI--DALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICM  310 (391)
Q Consensus       233 ~~~~~~~~~~~~~~TP~v~~i~al~--~~l~~i~~~gGl~~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~  310 (391)
T Consensus       271 eqh--IrRekatsnict~qal~al~a~~Y~~~lG~-~GL~~va~~~~~~A~Yl~~~L~~~~~~~~~-~~-----~~f~EF  341 (398)
T cd00613         271 EQH--IRREKATSNICTGQALLALMAAMYIVYLGP-EGLKEIAERAHLNANYLAKRLKEVGGVLPF-NG-----PFFHEF  341 (398)
T ss_pred             CCC--CCCCCEEECCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CC-----CEEEEE
T ss_conf             333--677752881643278999999999998488-638899999999999999999863898268-99-----866699


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCC---CCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8247310113734567888999998886282872665---5676750568615888999999999999
Q gi|254780153|r  311 KIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGS---YRDAPLGLRVWVGVTVEKEDLLLLCDWL  375 (391)
Q Consensus       311 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~r~~~~~~RIg~~g~i~~~dv~~L~~aL  375 (391)
T Consensus       342 vi~~~~~~-------~~~~----~~l~k~~i~~G~~~~~~y~~~~~~lli~~TE~~skediD~l~~aL  398 (398)
T cd00613         342 VLRLPPLY-------GIRA----EDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             EEECCCCC-------CHHH----HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf             99768754-------7689----999973621582866468888997999805899999999999749