HHsearch alignment for GI: 254780153 and conserved domain: cd00615
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.70 E-value=2.3e-06 Score=59.85 Aligned_cols=213 Identities=15% Similarity=0.043 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 999999999999996889985799974873489998753205789707997-073688888765323876306740577-
Q gi|254780153|r 47 KERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREFTAPY- 124 (391)
Q Consensus 47 ~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~~~~~- 124 (391)
T Consensus 58 ~g~I~eAq~laA~~~ga~~---s~flvnGsT~g~~a~i~a~~~~gd~vlv~RN~HkSv---~~gl~l~g~~Pvyl~p~~~ 131 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSV---INGLVLSGAVPVYLKPERN 131 (294)
T ss_pred CCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHH---HHHHHHCCCEEEEEECCCC
T ss_conf 7199999999999839996---699827726999999998328999899826518999---9999986984899606435
Q ss_pred ---CC--CCCHHHCC-------CCCCEEEEEEECCCCEEECCEEE--ECCCCCCEEEEEECCH--HHHCC-CC----CCC
Q ss_conf ---76--57867678-------55657997420242022032035--0256861488640110--11025-45----568
Q gi|254780153|r 125 ---GS--LPDFSKVD-------FDRDVVFVWNGTTSGVCVPDVGF--IPESREGLVICDATSA--VFARH-ID----FNK 183 (391)
Q Consensus 125 ---g~--~~~~~~~~-------~~~~v~~~h~ETstGv~~~~~~~--~~~~~~~llivD~vSs--~g~~p-~d----~~~ 183 (391)
T Consensus 132 ~~~gi~~~i~~~~~~~al~~~p~~k-av~lt~PtY~G~~~Dl~~i~~~~h~~~~~llVDEAhGah~~F~~~lp~~a~~~G 210 (294)
T cd00615 132 PYYGIAGGIPPETFKKALIEHPDAK-AAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC-EEEEECCCCCEEEECHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCHHHCC
T ss_conf 5569538999999999998589965-899977998877668999999984049979997754034431877875566669
Q ss_pred CEEEEECCHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 57999700120017665154456778887654114457783123200112321033478644666448899999999862
Q gi|254780153|r 184 LDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWL 263 (391)
Q Consensus 184 iDv~~a~sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i 263 (391)
T Consensus 211 AD~vv~S~HKtL~altQ~s~lh~~~~~v~~~-----------~--l~~~l~~------~qT-TSPSYllmASlD~ar~~~ 270 (294)
T cd00615 211 ADIVVQSTHKTLPALTQGSMIHVKGDLVNPD-----------R--VNEALNL------HQS-TSPSYLILASLDVARAMM 270 (294)
T ss_pred CEEEEECHHHCCCCCCHHHHEEECCCCCCHH-----------H--HHHHHHH------HCC-CCHHHHHHHHHHHHHHHH
T ss_conf 6399962321453322253202379968999-----------9--9999998------838-875899999999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0103189999999977999999987
Q gi|254780153|r 264 KKMGGLSACVERCNANAAVLFQFIQ 288 (391)
Q Consensus 264 ~~~gGl~~~~~r~~~~a~~l~~~i~ 288 (391)
T Consensus 271 ~~~-G-~~l~~~~l~~a~~~R~~i~ 293 (294)
T cd00615 271 ALE-G-KELVEELIELALYARQEIN 293 (294)
T ss_pred HHH-H-HHHHHHHHHHHHHHHHHHC
T ss_conf 999-9-9999999999999999965