HHsearch alignment for GI: 254780153 and conserved domain: cd06452
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.48 E-value=2.7e-11 Score=91.21 Aligned_cols=294 Identities=10% Similarity=0.005 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEEECC-C-CC
Q ss_conf 999999999996889985799974873489998753205789707997-07368888876532387630674057-7-76
Q gi|254780153|r 50 INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREFTAP-Y-GS 126 (391)
Q Consensus 50 ~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~~~~-~-g~ 126 (391)
T Consensus 46 i~efe~~aAeflG~-d--~A~~V~-Ggt~Gnqa~i~t~c~~GD~VIv~~naH~S~~---~a~~laG~~~~~v~~~~~~~~ 118 (361)
T cd06452 46 IKDFHHDLAEFLGM-D--EARVTP-GAREGKFAVMHSLCEKGDWVVVDGLAHYTSY---VAAERAGLNVREVPNTGHPEY 118 (361)
T ss_pred HHHHHHHHHHHCCC-C--EEEEEC-CCCHHHHHHHHHHHCCCCEEEECCCCHHHHH---HHHHHCCCEEEEECCCCCCCC
T ss_conf 89999999987199-6--699946-8520899999998479988985575128899---888863846999567768566
Q ss_pred CCCHHHC----C-------CCCC-EEEEEEECCCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEEC
Q ss_conf 5786767----8-------5565-7997420242022032035--0256861488640110110254556--85799970
Q gi|254780153|r 127 LPDFSKV----D-------FDRD-VVFVWNGTTSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFS 190 (391)
Q Consensus 127 ~~~~~~~----~-------~~~~-v~~~h~ETstGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~ 190 (391)
T Consensus 119 ~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~dl~~I~~iah~y~iPvlvD~A~~~g~lpv~a~~~gaD~v~~s 198 (361)
T cd06452 119 HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGS 198 (361)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHCCCCEEEEE
T ss_conf 51889999999999986189964999966787736631379999999985996897154224757987545079689986
Q ss_pred CHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 01200176651544567788876541144577831232001123210334786446664488999999998620103189
Q gi|254780153|r 191 AQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLS 270 (391)
Q Consensus 191 sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~ 270 (391)
T Consensus 199 ~hK~~~a~~p~gvL~~~~~~~~~v~R~~~~~~-~K~~~-----------~Lg~---t~~~~~~~~lmAS~~~~~~~--v~ 261 (361)
T cd06452 199 GHKSMAASAPIGVLATTEEWADIVFRTSQMFK-IKEVE-----------LLGC---TLRGAPLVTLMASFPHVKER--VK 261 (361)
T ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHCCCCH-HHHHH-----------HHCC---CCCCCHHHHHHCCCHHHHHH--HH
T ss_conf 56555345743788505067888874110110-45778-----------7467---86551799998072999999--98
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCC
Q ss_conf 99999997799999998747971676688200365317898247310113734567888999998886282872665567
Q gi|254780153|r 271 ACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRD 350 (391)
Q Consensus 271 ~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~ 350 (391)
T Consensus 262 -~~~eev~~ar~~~~el~kI~G~~~~ge~p~--~~dl~~~dt--~~~~~~~~~~~~~G-~~L~~~L~~rgI~~~~~g--- 332 (361)
T cd06452 262 -RWDEEVEKARWFVAELEKIEGIKQLGEKPK--NHDLMFFET--PSFDEIAKKHKRRG-YFLYSELKKRGIHGIKPG--- 332 (361)
T ss_pred -HHHHHHHHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEECC--CCCEEEEECCCCCC-CHHHHHHHHCCCEEECCC---
T ss_conf -777899999999999842845312155777--677456147--86324410478650-069999987697687168---
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 675056861588899999999999999
Q gi|254780153|r 351 APLGLRVWVGVTVEKEDLLLLCDWLRW 377 (391)
Q Consensus 351 ~~~~~RIg~~g~i~~~dv~~L~~aLe~ 377 (391)
T Consensus 333 ~t~~~~~~tyG-~t~e~i~~l~~a~ke 358 (361)
T cd06452 333 LTRYFKLSTYG-LTWEQVEYVVDAFKE 358 (361)
T ss_pred CCCEEEEEEEC-CCHHHHHHHHHHHHH
T ss_conf 53379999951-688899999999999