HHsearch alignment for GI: 254780153 and conserved domain: cd06452

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.48  E-value=2.7e-11  Score=91.21  Aligned_cols=294  Identities=10%  Similarity=0.005  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHHCCCCCEEEEECC-C-CC
Q ss_conf             999999999996889985799974873489998753205789707997-07368888876532387630674057-7-76
Q gi|254780153|r   50 INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLA-WESFGLGWMSDIRQLSLQDVREFTAP-Y-GS  126 (391)
Q Consensus        50 ~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~~~~~~~-~g~~~~r~~~~~~~~~~~~~~~~~~~-~-g~  126 (391)
T Consensus        46 i~efe~~aAeflG~-d--~A~~V~-Ggt~Gnqa~i~t~c~~GD~VIv~~naH~S~~---~a~~laG~~~~~v~~~~~~~~  118 (361)
T cd06452          46 IKDFHHDLAEFLGM-D--EARVTP-GAREGKFAVMHSLCEKGDWVVVDGLAHYTSY---VAAERAGLNVREVPNTGHPEY  118 (361)
T ss_pred             HHHHHHHHHHHCCC-C--EEEEEC-CCCHHHHHHHHHHHCCCCEEEECCCCHHHHH---HHHHHCCCEEEEECCCCCCCC
T ss_conf             89999999987199-6--699946-8520899999998479988985575128899---888863846999567768566


Q ss_pred             CCCHHHC----C-------CCCC-EEEEEEECCCCEEECCEEE--ECCCCCCEEEEEECCHHHHCCCCCC--CCEEEEEC
Q ss_conf             5786767----8-------5565-7997420242022032035--0256861488640110110254556--85799970
Q gi|254780153|r  127 LPDFSKV----D-------FDRD-VVFVWNGTTSGVCVPDVGF--IPESREGLVICDATSAVFARHIDFN--KLDVVTFS  190 (391)
Q Consensus       127 ~~~~~~~----~-------~~~~-v~~~h~ETstGv~~~~~~~--~~~~~~~llivD~vSs~g~~p~d~~--~iDv~~a~  190 (391)
T Consensus       119 ~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~dl~~I~~iah~y~iPvlvD~A~~~g~lpv~a~~~gaD~v~~s  198 (361)
T cd06452         119 HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGS  198 (361)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHCCCCEEEEE
T ss_conf             51889999999999986189964999966787736631379999999985996897154224757987545079689986


Q ss_pred             CHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             01200176651544567788876541144577831232001123210334786446664488999999998620103189
Q gi|254780153|r  191 AQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLS  270 (391)
Q Consensus       191 sQK~l~~ppGl~~v~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TP~v~~i~al~~~l~~i~~~gGl~  270 (391)
T Consensus       199 ~hK~~~a~~p~gvL~~~~~~~~~v~R~~~~~~-~K~~~-----------~Lg~---t~~~~~~~~lmAS~~~~~~~--v~  261 (361)
T cd06452         199 GHKSMAASAPIGVLATTEEWADIVFRTSQMFK-IKEVE-----------LLGC---TLRGAPLVTLMASFPHVKER--VK  261 (361)
T ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHHHCCCCH-HHHHH-----------HHCC---CCCCCHHHHHHCCCHHHHHH--HH
T ss_conf             56555345743788505067888874110110-45778-----------7467---86551799998072999999--98


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCC
Q ss_conf             99999997799999998747971676688200365317898247310113734567888999998886282872665567
Q gi|254780153|r  271 ACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRD  350 (391)
Q Consensus       271 ~~~~r~~~~a~~l~~~i~~~~~~~~~~~~~~~rS~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~r~  350 (391)
T Consensus       262 -~~~eev~~ar~~~~el~kI~G~~~~ge~p~--~~dl~~~dt--~~~~~~~~~~~~~G-~~L~~~L~~rgI~~~~~g---  332 (361)
T cd06452         262 -RWDEEVEKARWFVAELEKIEGIKQLGEKPK--NHDLMFFET--PSFDEIAKKHKRRG-YFLYSELKKRGIHGIKPG---  332 (361)
T ss_pred             -HHHHHHHHHHHHHHHHHCCCCHHHCCCCCC--CCCCEEECC--CCCEEEEECCCCCC-CHHHHHHHHCCCEEECCC---
T ss_conf             -777899999999999842845312155777--677456147--86324410478650-069999987697687168---


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             675056861588899999999999999
Q gi|254780153|r  351 APLGLRVWVGVTVEKEDLLLLCDWLRW  377 (391)
Q Consensus       351 ~~~~~RIg~~g~i~~~dv~~L~~aLe~  377 (391)
T Consensus       333 ~t~~~~~~tyG-~t~e~i~~l~~a~ke  358 (361)
T cd06452         333 LTRYFKLSTYG-LTWEQVEYVVDAFKE  358 (361)
T ss_pred             CCCEEEEEEEC-CCHHHHHHHHHHHHH
T ss_conf             53379999951-688899999999999