HHsearch alignment for GI: 254780153 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=94.74 E-value=0.33 Score=27.08 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCC-CEEEEEECCHHHHH-HHHHHHCCCCCEEEE
Q ss_conf 9889999999999999996889985799974873489998753205789-70799707368888-876532387630674
Q gi|254780153|r 43 CVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYR-GVDVLAWESFGLGW-MSDIRQLSLQDVREF 120 (391)
Q Consensus 43 s~~f~~i~~~~~~~l~~l~~~p~~y~v~~l~GsgT~~~ea~~~nl~~~~-~~~~~~~g~~~~r~-~~~~~~~~~~~~~~~ 120 (391)
T Consensus 51 sSll~kLTn~l~~d~lr~~G~~s~~~~~vvP-~aTGMsl~~~L~~~~~rp~a~yViw~RiDqKSc~Kai~~AG-l~p~vV 128 (389)
T pfam05889 51 SSVLAKLTNELVKDFLKLLGLREVKNCFVVP-LATGMSLLCMLSWRRKRPKAKYVIWPRIDQKSSIKAAERAG-FEPRLV 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CEEEEE
T ss_conf 1899999999999999982974316578950-41047999999998558899789986355522689999769-714887
Q ss_pred E---CCCCCCCCHHHCCC------CCCEEEEEEECCCCE-EECC----EEEECCCCCCEEEEEEC---CH-HHHCCCC--
Q ss_conf 0---57776578676785------565799742024202-2032----03502568614886401---10-1102545--
Q gi|254780153|r 121 T---APYGSLPDFSKVDF------DRDVVFVWNGTTSGV-CVPD----VGFIPESREGLVICDAT---SA-VFARHID-- 180 (391)
Q Consensus 121 ~---~~~g~~~~~~~~~~------~~~v~~~h~ETstGv-~~~~----~~~~~~~~~~llivD~v---Ss-~g~~p~d-- 180 (391)
T Consensus 129 e~~~~~d~l~Td~~~ie~~i~~~g~~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~i~~a 208 (389)
T pfam05889 129 ETVLDGDYLITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRLIAAA 208 (389)
T ss_pred EEEECCCEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHH
T ss_conf 52522882435899999999983877668998446656999966799999999974997478430366179999999999
Q ss_pred --CCCCEEEEECCHHCCCCCCCCEEEEECHHH
Q ss_conf --568579997001200176651544567788
Q gi|254780153|r 181 --FNKLDVVTFSAQKVLGGEAGFGIIILSPAS 210 (391)
Q Consensus 181 --~~~iDv~~a~sQK~l~~ppGl~~v~~s~~a 210 (391)
T Consensus 209 ~r~GRVDa~VQStDKNflVPVGGaIIas~d~~ 240 (389)
T pfam05889 209 HECGRVDAVVQSLDKNFIVPVGGAIIAAFDES 240 (389)
T ss_pred HHCCCCEEEEEECCCCEEEECCCEEEEECCHH
T ss_conf 86388218997068662553487489708889