RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase [Candidatus Liberibacter asiaticus str. psy62] (391 letters) >gnl|CDD|32115 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]. Length = 365 Score = 329 bits (844), Expect = 1e-90 Identities = 121/388 (31%), Positives = 175/388 (45%), Gaps = 43/388 (11%) Query: 8 TRKPKRPFFSSGPCAKRPG--WSLGILEGALLG-------RSHRCVLGKERINKAIQLTR 58 P+ FS+GP A P G SHR K + +A + R Sbjct: 1 ASMPRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLR 60 Query: 59 KVLEVPENYRIAIVPASDTGAVEMALWSLLGYRG---VDVLAWESFGLGWMSDI-RQLSL 114 ++L +P++Y++ + TG MA +LLG RG VD AW F + + +Q L Sbjct: 61 ELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKL 120 Query: 115 QDVREFTAPYGSLPDFSKVDFDRD---VVFVWNGTTSGVCVPDVGFIPESREGLVICDAT 171 D R A YGS+PD SK DF + V F WN T SGV VP++ I +GL++ DA+ Sbjct: 121 IDARIEEAGYGSIPDLSKWDFSDNDAYVHFCWNETISGVEVPELPDIGS--DGLLVADAS 178 Query: 172 SAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVK 231 SA+ +R ID +K DV+ AQK LG AG ++I+ P +ER E Y LP IF + Sbjct: 179 SAILSRPIDVSKYDVIYAGAQKNLGP-AGLTVVIVRPDLLERAESYT----LPSIFDYLT 233 Query: 232 GGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQEND 291 G NTP WLK GGL A R A A +L+ +I ++D Sbjct: 234 H------ADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 Query: 292 WIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA 351 + NL RS ++ +VD+++ K ++ E + Y G + Sbjct: 288 FYRNLVAKA-NRSRMNVTFTLVDAELD-----------KGFVAEAEAAGLIYLKG--HRS 333 Query: 352 PLGLRVWVGVTVEKEDLLLLCDWLRWVF 379 GLR + V ED+ L D++ W Sbjct: 334 VGGLRASIYNAVPLEDVEALTDFMDWFE 361 >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).. Length = 170 Score = 93.6 bits (233), Expect = 7e-20 Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 16/171 (9%) Query: 50 INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGY-RGVDVLAWESFGLGWMSD 108 + + + ++L+ P N + VP S TGA E AL +LLG V V A W++ Sbjct: 2 LEELEEKLARLLQ-PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWVAA 59 Query: 109 IR-QLSLQDVREFTAPYG-----SLPDFSKVDFDRDVVFVWNGTTSGVCVPD--VGFIPE 160 V A YG L + +V N T+ GV VP + I + Sbjct: 60 ELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK 119 Query: 161 SREGLVICDATSAVFAR-----HIDFNKLDVVTFSAQKVLGGEAGFGIIIL 206 L++ DA SA A I DVVTFS K LGGE G +I+ Sbjct: 120 EYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170 >gnl|CDD|99736 cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.. Length = 355 Score = 89.7 bits (223), Expect = 1e-18 Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 65/335 (19%) Query: 16 FSSGPCAKRP---------------GWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV 60 FS+GP A P G + ++E SHR + +N+A R++ Sbjct: 3 FSAGP-AALPEEVLEQAQKELLDFNGLGMSVME-----MSHRSKDFEAIVNEAESDLREL 56 Query: 61 LEVPENYRIAIVPASDTGAVEMALWSLLGYRG----VDVLAW------ESFGLGWMSDIR 110 L +P+NY++ + TG +LLG +G V AW E+ G + I Sbjct: 57 LNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIV 116 Query: 111 QLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGVCVPDVGFIPESREGLVI 167 + Y +PD D D +V N T GV +V P++ ++ Sbjct: 117 AAKEEG------KYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEV---PDTGGVPLV 167 Query: 168 CDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIF 227 D +S + +R ID +K V+ AQK L G AG ++I+ + + K PS + Sbjct: 168 ADMSSNILSRPIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITPS-----ML 221 Query: 228 R---MVKGGRVMEGLFCGETINTPSLLCIEDYIDALL--WLKKMGGLSACVERCNANAAV 282 L+ NTP I Y+ L+ WLK+ GG+ A +R A + Sbjct: 222 NYKTHADNN----SLY-----NTPPTFAI--YMMGLVLKWLKEQGGVEAMEKRNRQKAQL 270 Query: 283 LFQFIQENDWIENLAVDETTRSNTSICMKIVDSDI 317 L+ I ++ VD+ RS ++ ++ ++ Sbjct: 271 LYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEEL 305 >gnl|CDD|38001 KOG2790, KOG2790, KOG2790, Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and metabolism]. Length = 370 Score = 85.0 bits (210), Expect = 3e-17 Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 48/336 (14%) Query: 11 PKRPF-FSSGPCAKRP---------------GWSLGILEGALLGRSHRCVLGKERINKAI 54 P+R F++GP AK P G + ++E SHR + IN Sbjct: 5 PERVVNFAAGP-AKLPESVLLEAQKDLLNFNGSGISVME-----MSHRSKDFAKIINDTE 58 Query: 55 QLTRKVLEVPENYRIAIVPASDTG---AVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQ 111 L R++L +P+NY++ + TG AV + L L R D + S+ + ++ Sbjct: 59 SLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK 118 Query: 112 LS-----LQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGVCVPDVGFIPESRE 163 + ++ +T YG +PD S + + D +V+ N T GV + + + + Sbjct: 119 YGTPNIVIPKLKSYT--YGKVPDPSTWELNPDASYVYYCANETVHGVEFDFIP-VNDPKG 175 Query: 164 GLVICDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPL 223 +++ D +S +R +D +K V+ AQK + G AG ++I+ + PS Sbjct: 176 AVLVADMSSNFLSRPVDVSKFGVIFAGAQKNV-GPAGVTVVIVRKDLLGNALDITPSVLD 234 Query: 224 PKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVL 283 KI M K + NTP I W+ + GGL+A + + +L Sbjct: 235 YKI--MDKNNSLY---------NTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLL 283 Query: 284 FQFIQENDWIENLAVDETTRSNTSICMKIVDSDIAS 319 + I ++ V+ + RS ++ +I ++ + Sbjct: 284 YDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEA 319 >gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]. Length = 383 Score = 75.6 bits (186), Expect = 2e-14 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 26/287 (9%) Query: 40 SHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWE 99 HR + + ++ RKV EN + ++ S T A+E A+ SL+ G VL Sbjct: 30 GHRSPDFVGIMKEVLEKLRKVFGT-ENGDVVLLSGSGTLAMEAAVASLVE-PGDKVLVVV 87 Query: 100 S--FGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD--FDRD-----VVFVWNGTTSGV 150 + FG + ++I + +V +G D +V+ D+D V V N T++GV Sbjct: 88 NGKFGERF-AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGV 146 Query: 151 C--VPDVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKVLGGEAGFGIIIL 206 + ++ + L+I DA S++ + ++ DV +QK LG G + + Sbjct: 147 LNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAV 206 Query: 207 SPASVERLEKY-VPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKK 265 S ++E +E+ PS+ + K + ME G T TP + I +AL + + Sbjct: 207 SERALEAIEERKHPSF----YLDLKKWLKYMEKK--GSTPYTPPVNLIYALREALDLILE 260 Query: 266 MGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKI 312 GL A + R A L ++ L D RS T +K+ Sbjct: 261 E-GLEARIARHRRLAEALRAGLEALGL--ELFADPERRSPTVTAIKV 304 >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.. Length = 356 Score = 59.6 bits (145), Expect = 1e-09 Identities = 66/273 (24%), Positives = 103/273 (37%), Gaps = 27/273 (9%) Query: 49 RINKAIQ-LTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRG--VDVLAWESFGLGW 105 + I R V + EN ++ S TGA+E AL +LL G V V FG W Sbjct: 32 ALMDEILEGLRYVFQ-TENGLTFLLSGSGTGAMEAALSNLLE-PGDKVLVGVNGVFGDRW 89 Query: 106 MSDIRQLSLQDVREFTAPYGSLPDFSKVDF-----DRDVVFVWNGTTS-GVCVPDVGFIP 159 + DV P+G ++ D V + + TS GV P G Sbjct: 90 ADMAERYGA-DVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGA 148 Query: 160 ESRE--GLVICDATSAVFARHIDFNK--LDVVTFSAQKVLGGEAGFGIIILSPASVERLE 215 +++ L+I DA S++ ++ +DV +QK LG G G I S ++ER++ Sbjct: 149 LAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIK 208 Query: 216 KY--VPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACV 273 K + + ++K EG T L + + +D +L GL Sbjct: 209 KKTKPKGFYF-DLLLLLKY--WGEGYSYPHTPPVNLLYALREALDLIL----EEGLENRW 261 Query: 274 ERCNANAAVLFQFIQENDWIENLAVDETTRSNT 306 R A L + ++ L RS T Sbjct: 262 ARHRRLAKALREGLEA--LGLKLLAKPELRSPT 292 >gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 371 Score = 53.8 bits (130), Expect = 8e-08 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 13/190 (6%) Query: 139 VVFVWNGTTSGVC--VPDVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKV 194 V +G V ++G + LV+ DA AV R ID L D + FS K+ Sbjct: 143 VAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKL 202 Query: 195 LGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEG--LFCGETINTPSLLC 252 G G G++ +E+L + + + +++ + F T N ++ Sbjct: 203 Y-GPTGIGVLYGRRDLLEKLPPWKGGGGMIDLVSLLQETTFADAPSKFEAGTPNIAGIIG 261 Query: 253 IEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENL-AVDETTRSNTSICMK 311 + +D +L ++ GL A + AA L++ + I + AV E S S Sbjct: 262 LGAALD---YLAEI-GLEAIEKHERELAAYLYERLLAIPGIRLVPAVAERRPSIISFNFP 317 Query: 312 IVDS-DIASL 320 V D+A+L Sbjct: 318 GVHPHDVATL 327 >gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]. Length = 405 Score = 46.9 bits (111), Expect = 9e-06 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 31/252 (12%) Query: 139 VVFVWNGTTSGVCVP--DVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKV 194 V +G P ++ + LV+ DA A ID +L D + FS K Sbjct: 166 VALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKW 225 Query: 195 LGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGE--TINTPSLLC 252 L G G G++ + +E LE ++ + + +G + E E T N + Sbjct: 226 LLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIG 285 Query: 253 IEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKI 312 + AL +L ++ G+ A L + + E +E + R Sbjct: 286 LA---AALDYLLEI-GMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADR--------- 332 Query: 313 VDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIG--------SYRDAPLGLRVWVGVTVE 364 + N + + + L+++ IA G +R + + Sbjct: 333 ----GGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT 388 Query: 365 KEDLLLLCDWLR 376 +ED+ L + L+ Sbjct: 389 EEDVDRLLEALK 400 >gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]. Length = 385 Score = 42.3 bits (99), Expect = 2e-04 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 25/325 (7%) Query: 4 MRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLG-RSHRCVLGKERINKAIQLTRKVLE 62 + P P R GP + G + LG S V + + + I+ K Sbjct: 9 LLDPMYVPVRTLLGPGP-SNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTA- 66 Query: 63 VPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWES--FGLGWMSDIRQLSLQDVREF 120 N + ++ S E AL +LL G +VL + +G R+ + V Sbjct: 67 ---NAQTFVISGSGHSGWEAALVNLL-EPGDNVLVVSTGTWGQRAADCARRYGAE-VDVV 121 Query: 121 TAPYG---SLPDFSK--VDFDRDVVFVWNGTTS-GVCVPDV---GFIPESREGLVICDAT 171 A G L + ++ VFV +G +S GV + G + E L++ D Sbjct: 122 EADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181 Query: 172 SAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRM 229 +++ + + +DV +QK LG AG II S ++E + + P+ F + Sbjct: 182 ASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDR-KTKPVSFYFDI 240 Query: 230 VKGGR-VMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQ 288 ++ G +TP + + + A L L GL R + L + Sbjct: 241 LRLGNFWGCDGEPRAYHHTPPVQLLYS-LRAALALIAEEGLENSWRRHREMSKWLKLSL- 298 Query: 289 ENDWIENLAVDETTRSNTSICMKIV 313 E ++ VDE R T +K+ Sbjct: 299 EALGLQLFVVDEELRLPTVTTVKVP 323 >gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid transport and metabolism]. Length = 428 Score = 34.5 bits (79), Expect = 0.056 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 17/106 (16%) Query: 148 SGVCVP--DVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKVLGGEAGFGI 203 GV P ++ I V DA AV +D +L D ++ SA K+ G G G Sbjct: 194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPP-GIGA 252 Query: 204 IILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPS 249 + + P ++ + GG GL G T+ TP Sbjct: 253 LYVRRKR-----------PRLRVEPPLSGGGQERGLRSG-TVATPL 286 >gnl|CDD|35104 COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only]. Length = 517 Score = 33.1 bits (75), Expect = 0.15 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 87 LLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVWNGT 146 + G V++ +SFG ++ ++ + F APYG+LP+ + R+ VFV GT Sbjct: 244 IQGCWIVEIGEMDSFGKADVTALKVFITRRTDSFRAPYGTLPE----SYRRECVFV--GT 297 Query: 147 TS 148 T+ Sbjct: 298 TN 299 >gnl|CDD|146974 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N terminal region may adopt a thioredoxin fold and catalyse redox reactions. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP. Length = 238 Score = 32.9 bits (75), Expect = 0.16 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 315 SDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDLLL 370 ++I+ + +N Q S + L K ++ I Y+ VW + K+D L+ Sbjct: 61 TNISYMVVNHQGSSSRLKYHHL-KRRVSEHIPVYQQEENQPDVWTLLNGNKDDFLI 115 >gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase. Length = 367 Score = 30.8 bits (70), Expect = 0.66 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Query: 183 KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVK 231 +D+V+FS K+LGG GII+ +ERL+K PL + R+ K Sbjct: 203 GVDLVSFSGDKLLGG-PQAGIIVGKKELIERLKKN----PLKRALRVDK 246 >gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]. Length = 468 Score = 28.8 bits (64), Expect = 2.5 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Query: 118 REFTAPYGSLPDFSKVDFD---RDVVFVWNGTTS 148 REF Y LP+ ++ D R VV V NG + Sbjct: 138 REFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA 171 >gnl|CDD|48200 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.. Length = 352 Score = 27.9 bits (62), Expect = 5.5 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 26 GWSLGILEG------ALLGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGA 79 GW +EG A + ++GK+ +N I+ +V+ YR V S Sbjct: 27 GWGEPTVEGKARTVEAAVQELEDYLIGKDPMN--IEHHWQVMYRGGFYRGGPVLMSAISG 84 Query: 80 VEMALWSLLGYRGVDVLAWESFG 102 ++ ALW + G + + V + G Sbjct: 85 IDQALWDIKG-KVLGVPVHQLLG 106 >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.. Length = 369 Score = 27.2 bits (61), Expect = 9.2 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Query: 152 VPDVGFIPE---SREGLVICDAT--SAVFARHIDFNKLDVVTFSAQKVLGG 197 V D+ I E L++ D T + R ++ D+V SA K +GG Sbjct: 141 VVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELG-ADIVVHSATKYIGG 190 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.140 0.437 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,029,941 Number of extensions: 270367 Number of successful extensions: 562 Number of sequences better than 10.0: 1 Number of HSP's gapped: 542 Number of HSP's successfully gapped: 22 Length of query: 391 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 295 Effective length of database: 4,189,273 Effective search space: 1235835535 Effective search space used: 1235835535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.4 bits)