RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (391 letters)



>gnl|CDD|32115 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism
           / Amino acid transport and metabolism].
          Length = 365

 Score =  329 bits (844), Expect = 1e-90
 Identities = 121/388 (31%), Positives = 175/388 (45%), Gaps = 43/388 (11%)

Query: 8   TRKPKRPFFSSGPCAKRPG--WSLGILEGALLG-------RSHRCVLGKERINKAIQLTR 58
              P+   FS+GP A  P              G        SHR    K  + +A +  R
Sbjct: 1   ASMPRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLR 60

Query: 59  KVLEVPENYRIAIVPASDTGAVEMALWSLLGYRG---VDVLAWESFGLGWMSDI-RQLSL 114
           ++L +P++Y++  +    TG   MA  +LLG RG   VD  AW  F +     + +Q  L
Sbjct: 61  ELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKL 120

Query: 115 QDVREFTAPYGSLPDFSKVDFDRD---VVFVWNGTTSGVCVPDVGFIPESREGLVICDAT 171
            D R   A YGS+PD SK DF  +   V F WN T SGV VP++  I    +GL++ DA+
Sbjct: 121 IDARIEEAGYGSIPDLSKWDFSDNDAYVHFCWNETISGVEVPELPDIGS--DGLLVADAS 178

Query: 172 SAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVK 231
           SA+ +R ID +K DV+   AQK LG  AG  ++I+ P  +ER E Y     LP IF  + 
Sbjct: 179 SAILSRPIDVSKYDVIYAGAQKNLGP-AGLTVVIVRPDLLERAESYT----LPSIFDYLT 233

Query: 232 GGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQEND 291
                     G   NTP             WLK  GGL A   R  A A +L+ +I ++D
Sbjct: 234 H------ADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287

Query: 292 WIENLAVDETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDA 351
           +  NL      RS  ++   +VD+++            K  ++  E   + Y  G    +
Sbjct: 288 FYRNLVAKA-NRSRMNVTFTLVDAELD-----------KGFVAEAEAAGLIYLKG--HRS 333

Query: 352 PLGLRVWVGVTVEKEDLLLLCDWLRWVF 379
             GLR  +   V  ED+  L D++ W  
Sbjct: 334 VGGLRASIYNAVPLEDVEALTDFMDWFE 361


>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
           type I) of pyridoxal phosphate (PLP)-dependent enzymes.
           PLP combines with an alpha-amino acid to form a compound
           called a Schiff base or aldimine intermediate, which
           depending on the reaction, is the substrate in four
           kinds of reactions (1) transamination (movement of amino
           groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           Structure and sequence analysis has revealed that the
           PLP dependent enzymes can be classified into four major
           groups of different evolutionary origin: aspartate
           aminotransferase superfamily (fold type I), tryptophan
           synthase beta superfamily (fold type II), alanine
           racemase superfamily (fold type III), and D-amino acid
           superfamily (fold type IV) and Glycogen phophorylase
           family (fold type V)..
          Length = 170

 Score = 93.6 bits (233), Expect = 7e-20
 Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 16/171 (9%)

Query: 50  INKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGY-RGVDVLAWESFGLGWMSD 108
           + +  +   ++L+ P N +   VP S TGA E AL +LLG    V V A       W++ 
Sbjct: 2   LEELEEKLARLLQ-PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWVAA 59

Query: 109 IR-QLSLQDVREFTAPYG-----SLPDFSKVDFDRDVVFVWNGTTSGVCVPD--VGFIPE 160
                    V    A YG      L +         +V   N T+ GV VP   +  I +
Sbjct: 60  ELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK 119

Query: 161 SREGLVICDATSAVFAR-----HIDFNKLDVVTFSAQKVLGGEAGFGIIIL 206
               L++ DA SA  A       I     DVVTFS  K LGGE G  +I+ 
Sbjct: 120 EYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170


>gnl|CDD|99736 cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family.
           This family belongs to pyridoxal phosphate
           (PLP)-dependent aspartate aminotransferase superfamily
           (fold I). The major group in this CD corresponds to
           phosphoserine aminotransferase (PSAT).  PSAT is active
           as a dimer and catalyzes the conversion of
           phosphohydroxypyruvate to phosphoserine..
          Length = 355

 Score = 89.7 bits (223), Expect = 1e-18
 Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 65/335 (19%)

Query: 16  FSSGPCAKRP---------------GWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV 60
           FS+GP A  P               G  + ++E      SHR    +  +N+A    R++
Sbjct: 3   FSAGP-AALPEEVLEQAQKELLDFNGLGMSVME-----MSHRSKDFEAIVNEAESDLREL 56

Query: 61  LEVPENYRIAIVPASDTGAVEMALWSLLGYRG----VDVLAW------ESFGLGWMSDIR 110
           L +P+NY++  +    TG       +LLG +G    V   AW      E+   G +  I 
Sbjct: 57  LNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIV 116

Query: 111 QLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGVCVPDVGFIPESREGLVI 167
               +        Y  +PD    D   D  +V    N T  GV   +V   P++    ++
Sbjct: 117 AAKEEG------KYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEV---PDTGGVPLV 167

Query: 168 CDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIF 227
            D +S + +R ID +K  V+   AQK L G AG  ++I+    + +  K  PS     + 
Sbjct: 168 ADMSSNILSRPIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITPS-----ML 221

Query: 228 R---MVKGGRVMEGLFCGETINTPSLLCIEDYIDALL--WLKKMGGLSACVERCNANAAV 282
                         L+     NTP    I  Y+  L+  WLK+ GG+ A  +R    A +
Sbjct: 222 NYKTHADNN----SLY-----NTPPTFAI--YMMGLVLKWLKEQGGVEAMEKRNRQKAQL 270

Query: 283 LFQFIQENDWIENLAVDETTRSNTSICMKIVDSDI 317
           L+  I  ++      VD+  RS  ++  ++   ++
Sbjct: 271 LYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEEL 305


>gnl|CDD|38001 KOG2790, KOG2790, KOG2790, Phosphoserine aminotransferase [Coenzyme
           transport and metabolism, Amino acid transport and
           metabolism].
          Length = 370

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 48/336 (14%)

Query: 11  PKRPF-FSSGPCAKRP---------------GWSLGILEGALLGRSHRCVLGKERINKAI 54
           P+R   F++GP AK P               G  + ++E      SHR     + IN   
Sbjct: 5   PERVVNFAAGP-AKLPESVLLEAQKDLLNFNGSGISVME-----MSHRSKDFAKIINDTE 58

Query: 55  QLTRKVLEVPENYRIAIVPASDTG---AVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQ 111
            L R++L +P+NY++  +    TG   AV + L  L   R  D +   S+      + ++
Sbjct: 59  SLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK 118

Query: 112 LS-----LQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGVCVPDVGFIPESRE 163
                  +  ++ +T  YG +PD S  + + D  +V+   N T  GV    +  + + + 
Sbjct: 119 YGTPNIVIPKLKSYT--YGKVPDPSTWELNPDASYVYYCANETVHGVEFDFIP-VNDPKG 175

Query: 164 GLVICDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPL 223
            +++ D +S   +R +D +K  V+   AQK + G AG  ++I+    +       PS   
Sbjct: 176 AVLVADMSSNFLSRPVDVSKFGVIFAGAQKNV-GPAGVTVVIVRKDLLGNALDITPSVLD 234

Query: 224 PKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVL 283
            KI  M K   +          NTP    I        W+ + GGL+A  +     + +L
Sbjct: 235 YKI--MDKNNSLY---------NTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLL 283

Query: 284 FQFIQENDWIENLAVDETTRSNTSICMKIVDSDIAS 319
           +  I  ++      V+ + RS  ++  +I   ++ +
Sbjct: 284 YDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEA 319


>gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
           aspartate aminotransferase [Amino acid transport and
           metabolism].
          Length = 383

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 26/287 (9%)

Query: 40  SHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWE 99
            HR       + + ++  RKV    EN  + ++  S T A+E A+ SL+   G  VL   
Sbjct: 30  GHRSPDFVGIMKEVLEKLRKVFGT-ENGDVVLLSGSGTLAMEAAVASLVE-PGDKVLVVV 87

Query: 100 S--FGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVD--FDRD-----VVFVWNGTTSGV 150
           +  FG  + ++I +    +V      +G   D  +V+   D+D     V  V N T++GV
Sbjct: 88  NGKFGERF-AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGV 146

Query: 151 C--VPDVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKVLGGEAGFGIIIL 206
              + ++    +    L+I DA S++    +  ++   DV    +QK LG   G   + +
Sbjct: 147 LNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAV 206

Query: 207 SPASVERLEKY-VPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKK 265
           S  ++E +E+   PS+       + K  + ME    G T  TP +  I    +AL  + +
Sbjct: 207 SERALEAIEERKHPSF----YLDLKKWLKYMEKK--GSTPYTPPVNLIYALREALDLILE 260

Query: 266 MGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKI 312
             GL A + R    A  L   ++       L  D   RS T   +K+
Sbjct: 261 E-GLEARIARHRRLAEALRAGLEALGL--ELFADPERRSPTVTAIKV 304


>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
           family. This family belongs to pyridoxal phosphate
           (PLP)-dependent aspartate aminotransferase superfamily
           (fold I). The major groups in this CD correspond to
           alanine-glyoxylate aminotransferase (AGAT),
           serine-glyoxylate aminotransferase (SGAT), and
           3-hydroxykynurenine transaminase (HKT). AGAT is a
           homodimeric protein, which catalyses the transamination
           of glyoxylate to glycine, and SGAT converts serine and
           glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
           the PLP-dependent transamination of 3-hydroxykynurenine,
           a potentially toxic metabolite of the kynurenine
           pathway..
          Length = 356

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 66/273 (24%), Positives = 103/273 (37%), Gaps = 27/273 (9%)

Query: 49  RINKAIQ-LTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRG--VDVLAWESFGLGW 105
            +   I    R V +  EN    ++  S TGA+E AL +LL   G  V V     FG  W
Sbjct: 32  ALMDEILEGLRYVFQ-TENGLTFLLSGSGTGAMEAALSNLLE-PGDKVLVGVNGVFGDRW 89

Query: 106 MSDIRQLSLQDVREFTAPYGSLPDFSKVDF-----DRDVVFVWNGTTS-GVCVPDVGFIP 159
                +    DV     P+G      ++       D   V + +  TS GV  P  G   
Sbjct: 90  ADMAERYGA-DVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGA 148

Query: 160 ESRE--GLVICDATSAVFARHIDFNK--LDVVTFSAQKVLGGEAGFGIIILSPASVERLE 215
            +++   L+I DA S++       ++  +DV    +QK LG   G G I  S  ++ER++
Sbjct: 149 LAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIK 208

Query: 216 KY--VPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACV 273
           K      +    +  ++K     EG     T     L  + + +D +L      GL    
Sbjct: 209 KKTKPKGFYF-DLLLLLKY--WGEGYSYPHTPPVNLLYALREALDLIL----EEGLENRW 261

Query: 274 ERCNANAAVLFQFIQENDWIENLAVDETTRSNT 306
            R    A  L + ++       L      RS T
Sbjct: 262 ARHRRLAKALREGLEA--LGLKLLAKPELRSPT 292


>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain is
           found in amino transferases, and other enzymes including
           cysteine desulphurase EC:4.4.1.-.
          Length = 371

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 13/190 (6%)

Query: 139 VVFVWNGTTSGVC--VPDVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKV 194
           V        +G    V ++G +      LV+ DA  AV  R ID   L  D + FS  K+
Sbjct: 143 VAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKL 202

Query: 195 LGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEG--LFCGETINTPSLLC 252
             G  G G++      +E+L  +     +  +  +++     +    F   T N   ++ 
Sbjct: 203 Y-GPTGIGVLYGRRDLLEKLPPWKGGGGMIDLVSLLQETTFADAPSKFEAGTPNIAGIIG 261

Query: 253 IEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENL-AVDETTRSNTSICMK 311
           +   +D   +L ++ GL A  +     AA L++ +     I  + AV E   S  S    
Sbjct: 262 LGAALD---YLAEI-GLEAIEKHERELAAYLYERLLAIPGIRLVPAVAERRPSIISFNFP 317

Query: 312 IVDS-DIASL 320
            V   D+A+L
Sbjct: 318 GVHPHDVATL 327


>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
           metabolism].
          Length = 405

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 31/252 (12%)

Query: 139 VVFVWNGTTSGVCVP--DVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKV 194
           V        +G   P  ++  +      LV+ DA  A     ID  +L  D + FS  K 
Sbjct: 166 VALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKW 225

Query: 195 LGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGE--TINTPSLLC 252
           L G  G G++ +    +E LE ++    + +     +G  + E     E  T N    + 
Sbjct: 226 LLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIG 285

Query: 253 IEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKI 312
           +     AL +L ++ G+ A           L + + E   +E     +  R         
Sbjct: 286 LA---AALDYLLEI-GMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADR--------- 332

Query: 313 VDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIG--------SYRDAPLGLRVWVGVTVE 364
                  +  N +      + + L+++ IA   G                +R  + +   
Sbjct: 333 ----GGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNT 388

Query: 365 KEDLLLLCDWLR 376
           +ED+  L + L+
Sbjct: 389 EEDVDRLLEALK 400


>gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1
           [General function prediction only].
          Length = 385

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 25/325 (7%)

Query: 4   MRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLG-RSHRCVLGKERINKAIQLTRKVLE 62
           +  P   P R     GP +   G     +    LG  S   V   + + + I+   K   
Sbjct: 9   LLDPMYVPVRTLLGPGP-SNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTA- 66

Query: 63  VPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWES--FGLGWMSDIRQLSLQDVREF 120
              N +  ++  S     E AL +LL   G +VL   +  +G       R+   + V   
Sbjct: 67  ---NAQTFVISGSGHSGWEAALVNLL-EPGDNVLVVSTGTWGQRAADCARRYGAE-VDVV 121

Query: 121 TAPYG---SLPDFSK--VDFDRDVVFVWNGTTS-GVCVPDV---GFIPESREGLVICDAT 171
            A  G    L + ++         VFV +G +S GV    +   G +    E L++ D  
Sbjct: 122 EADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181

Query: 172 SAVFARHIDFN--KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRM 229
           +++     + +   +DV    +QK LG  AG  II  S  ++E +     + P+   F +
Sbjct: 182 ASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDR-KTKPVSFYFDI 240

Query: 230 VKGGR-VMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQ 288
           ++ G             +TP +  +   + A L L    GL     R    +  L   + 
Sbjct: 241 LRLGNFWGCDGEPRAYHHTPPVQLLYS-LRAALALIAEEGLENSWRRHREMSKWLKLSL- 298

Query: 289 ENDWIENLAVDETTRSNTSICMKIV 313
           E   ++   VDE  R  T   +K+ 
Sbjct: 299 EALGLQLFVVDEELRLPTVTTVKVP 323


>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
           transport and metabolism].
          Length = 428

 Score = 34.5 bits (79), Expect = 0.056
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 148 SGVCVP--DVGFIPESREGLVICDATSAVFARHIDFNKL--DVVTFSAQKVLGGEAGFGI 203
            GV  P  ++  I       V  DA  AV    +D  +L  D ++ SA K+ G   G G 
Sbjct: 194 IGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPP-GIGA 252

Query: 204 IILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPS 249
           + +               P  ++   + GG    GL  G T+ TP 
Sbjct: 253 LYVRRKR-----------PRLRVEPPLSGGGQERGLRSG-TVATPL 286


>gnl|CDD|35104 COG5545, COG5545, Predicted P-loop ATPase and inactivated
           derivatives [General function prediction only].
          Length = 517

 Score = 33.1 bits (75), Expect = 0.15
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 87  LLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVWNGT 146
           + G   V++   +SFG   ++ ++    +    F APYG+LP+     + R+ VFV  GT
Sbjct: 244 IQGCWIVEIGEMDSFGKADVTALKVFITRRTDSFRAPYGTLPE----SYRRECVFV--GT 297

Query: 147 TS 148
           T+
Sbjct: 298 TN 299


>gnl|CDD|146974 pfam04592, SelP_N, Selenoprotein P, N terminal region.  SelP is the
           only known eukaryotic selenoprotein that contains
           multiple selenocysteine (Sec) residues, and accounts for
           more than 50% of the selenium content of rat and human
           plasma. It is thought to be glycosylated. SelP may have
           antioxidant properties. It can attach to epithelial
           cells, and may protect vascular endothelial cells
           against peroxynitrite toxicity. The high selenium
           content of SelP suggests that it may be involved in
           selenium intercellular transport or storage. The
           promoter structure of bovine SelP suggest that it may be
           involved in countering heavy metal intoxication, and may
           also have a developmental function. The N-terminal
           region of SelP can exist independently of the C terminal
           region. Zebrafish selenoprotein Pb lacks the C terminal
           Sec-rich region, and a protein encoded by the rat SelP
           gene and lacking this region has also been reported.
           N-terminal region contains a conserved SecxxCys motif,
           which is similar to the CysxxCys found in thioredoxins.
           It is speculated that the N terminal region may adopt a
           thioredoxin fold and catalyse redox reactions. The
           N-terminal region also contains a His-rich region, which
           is thought to mediate heparin binding. Binding to
           heparan proteoglycans could account for the membrane
           binding properties of SelP.
          Length = 238

 Score = 32.9 bits (75), Expect = 0.16
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 315 SDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDLLL 370
           ++I+ + +N Q S  +     L K  ++  I  Y+       VW  +   K+D L+
Sbjct: 61  TNISYMVVNHQGSSSRLKYHHL-KRRVSEHIPVYQQEENQPDVWTLLNGNKDDFLI 115


>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase. 
          Length = 367

 Score = 30.8 bits (70), Expect = 0.66
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 183 KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVK 231
            +D+V+FS  K+LGG    GII+     +ERL+K     PL +  R+ K
Sbjct: 203 GVDLVSFSGDKLLGG-PQAGIIVGKKELIERLKKN----PLKRALRVDK 246


>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
           [Nucleotide transport and metabolism].
          Length = 468

 Score = 28.8 bits (64), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 118 REFTAPYGSLPDFSKVDFD---RDVVFVWNGTTS 148
           REF   Y  LP+   ++ D   R VV V NG  +
Sbjct: 138 REFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA 171


>gnl|CDD|48200 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase
           catalyses the dehydration of galactonate to
           2-keto-3-deoxygalactnate (KDGal), as part of the
           D-galactonate nonphosphorolytic catabolic
           Entner-Doudoroff pathway. D-galactonate dehydratase
           belongs to the enolase superfamily of enzymes,
           characterized by the presence of an enolate anion
           intermediate which is generated by abstraction of the
           alpha-proton of the carboxylate substrate by an active
           site residue and is stabilized by coordination to the
           essential Mg2+ ion..
          Length = 352

 Score = 27.9 bits (62), Expect = 5.5
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 26  GWSLGILEG------ALLGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGA 79
           GW    +EG      A +      ++GK+ +N  I+   +V+     YR   V  S    
Sbjct: 27  GWGEPTVEGKARTVEAAVQELEDYLIGKDPMN--IEHHWQVMYRGGFYRGGPVLMSAISG 84

Query: 80  VEMALWSLLGYRGVDVLAWESFG 102
           ++ ALW + G + + V   +  G
Sbjct: 85  IDQALWDIKG-KVLGVPVHQLLG 106


>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
           dependent enzyme and catalyzes the committed step of
           methionine biosynthesis. This pathway is unique to
           microorganisms and plants, rendering the enzyme an
           attractive target for the development of antimicrobials
           and herbicides. This subgroup also includes
           cystathionine gamma-lyases (CGL), O-acetylhomoserine
           sulfhydrylases and O-acetylhomoserine thiol lyases.
           CGL's are very similar to CGS's. Members of this group
           are widely distributed among all three forms of life..
          Length = 369

 Score = 27.2 bits (61), Expect = 9.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 152 VPDVGFIPE---SREGLVICDAT--SAVFARHIDFNKLDVVTFSAQKVLGG 197
           V D+  I E       L++ D T  +    R ++    D+V  SA K +GG
Sbjct: 141 VVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELG-ADIVVHSATKYIGG 190


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,029,941
Number of extensions: 270367
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 22
Length of query: 391
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 295
Effective length of database: 4,189,273
Effective search space: 1235835535
Effective search space used: 1235835535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.4 bits)