RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (391 letters)



>gnl|CDD|179533 PRK03080, PRK03080, phosphoserine aminotransferase; Provisional.
          Length = 378

 Score =  602 bits (1555), Expect = e-173
 Identities = 206/387 (53%), Positives = 253/387 (65%), Gaps = 10/387 (2%)

Query: 1   MLDMRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV 60
           M  +  P  +P  P FSSGPC KRPGW L  L  ALLGRSHR    K  + + I+ TR++
Sbjct: 1   MTTLTIPALRPADPRFSSGPCKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTREL 60

Query: 61  LEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDI-RQLSLQDVRE 119
           L +PE Y + IVP SDTGA EMALWSLLG R VD LAWESFG  W +D+ +QL L+D R 
Sbjct: 61  LSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLAWESFGSKWATDVVKQLKLEDPRV 120

Query: 120 FTAPYGSLPDFSKVDFDRDVVFVWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHI 179
             A YGSLPD S VDFDRDVVF WNGTT+GV VP   +I   REGL ICDATSA FA  +
Sbjct: 121 LEADYGSLPDLSAVDFDRDVVFTWNGTTTGVRVPVARWIGADREGLTICDATSAAFALPL 180

Query: 180 DFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGL 239
           D++KLDV TFS QKVLGGE G G+ ILSP +VERLE Y P+ P+PK FR+ KGG+ +E  
Sbjct: 181 DWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENS 240

Query: 240 FCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVD 299
           F G+TINTPS+L +EDY+D L W   +GGL A + R  ANA+VL+ + ++  W   L  D
Sbjct: 241 FKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVAD 300

Query: 300 ETTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWV 359
             TRSNTS+ +  VD         +Q +   + ++ L +E  A DI  YRDAP GLR+W 
Sbjct: 301 PATRSNTSVTLDFVD---------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWC 351

Query: 360 GVTVEKEDLLLLCDWLRWVFYFQKISF 386
           G TVE  D+  L  WL W F   K + 
Sbjct: 352 GPTVEPADVEALTPWLDWAFERLKAAL 378


>gnl|CDD|130432 TIGR01365, serC_2, phosphoserine aminotransferase, Methanosarcina
           type.  This model represents a variant form of the
           serine biosynthesis enzyme phosphoserine
           aminotransferase, as found in a small number of
           distantly related species, including Caulobacter
           crescentus, Mesorhizobium loti, and the archaeon
           Methanosarcina barkeri.
          Length = 374

 Score =  537 bits (1384), Expect = e-153
 Identities = 231/371 (62%), Positives = 281/371 (75%), Gaps = 1/371 (0%)

Query: 10  KPKRPFFSSGPCAKRPGWSLGILEGALLGRSHRCVLGKERINKAIQLTRKVLEVPENYRI 69
           +P  P FSSGPCAKRPGWS+  L+ A LGRSHR  LGKE++ +AI+ TR++L VP +Y I
Sbjct: 1   RPANPCFSSGPCAKRPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLI 60

Query: 70  AIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDI-RQLSLQDVREFTAPYGSLP 128
            IVPASDTGAVEMALWS+LG RGVDVLAWESFG GW++D+ +QL L DVR   A YG LP
Sbjct: 61  GIVPASDTGAVEMALWSMLGCRGVDVLAWESFGKGWVTDVTKQLKLPDVRVLEAEYGKLP 120

Query: 129 DFSKVDFDRDVVFVWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHIDFNKLDVVT 188
           D  KVDF  DVVF WNGTTSGV VP+  FIP  REGL ICDATSA FA+ +D++KLDVVT
Sbjct: 121 DLKKVDFKNDVVFTWNGTTSGVRVPNGDFIPADREGLTICDATSAAFAQDLDYHKLDVVT 180

Query: 189 FSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTP 248
           FS QKVLGGE   G++ILSP +V RLE Y P+WPLPKIFR+ KGG++ + +F G TINTP
Sbjct: 181 FSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTP 240

Query: 249 SLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSI 308
           S+LC+ED++DAL W + +GGL   + R + N AVL  F+ +N+WI  LA     RSNTS+
Sbjct: 241 SMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSV 300

Query: 309 CMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVGVTVEKEDL 368
           C+K+VD  I +LD ++Q  F K ++S LEKE +AYDIGSYRDAP GLR+W G TVEK DL
Sbjct: 301 CLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDL 360

Query: 369 LLLCDWLRWVF 379
             LC WL W F
Sbjct: 361 ECLCPWLDWAF 371


>gnl|CDD|130431 TIGR01364, serC_1, phosphoserine aminotransferase.  This model
           represents the common form of the phosphoserine
           aminotransferase SerC. The phosphoserine
           aminotransferase of the archaeon Methanosarcina barkeri
           and putative phosphoserine aminotransferase of
           Mycobacterium tuberculosis are represented by separate
           models. All are members of the class V aminotransferases
           (pfam00266).
          Length = 349

 Score = 83.5 bits (207), Expect = 8e-17
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 33/289 (11%)

Query: 40  SHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGV-DVL-- 96
           SHR    +   N+A    R++L +P+NY +  +    TG       +LL    V D +  
Sbjct: 29  SHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVT 88

Query: 97  -AWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGVCV 152
            AW             +++    +    Y  +PD S  +   D  +V    N T  GV  
Sbjct: 89  GAWSKKAAKEAKKYGVVNVVASGK-EGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEF 147

Query: 153 PDVGFIPESREGLVICDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVE 212
            +   +P+ +   ++ D +S + +R ID +K  ++   AQK + G AG  ++I+    + 
Sbjct: 148 RE---LPDVKNAPLVADMSSNILSRPIDVSKFGLIYAGAQKNI-GPAGLTVVIVRKDLLG 203

Query: 213 RLEKYVPSWPLPKIFR---MVKGGRVMEGLFCGETINTPSLLCIEDYIDALL--WLKKMG 267
           R  +       P +       +       ++     NTP    I  Y+  L+  WLK+ G
Sbjct: 204 RASR-----ITPSMLNYKIHAEND----SMY-----NTPPTFAI--YVSGLVFKWLKEQG 247

Query: 268 GLSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSD 316
           G+ A  +R  A A +L+  I  ++      VD   RS  ++   + + +
Sbjct: 248 GVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE 296


>gnl|CDD|130433 TIGR01366, serC_3, phosphoserine aminotransferase, putative.  This
           model represents a putative variant form of the serine
           biosynthesis enzyme phosphoserine aminotransferase, as
           found in Mycobacterium tuberculosis and related high-GC
           Gram-positive bacteria.
          Length = 361

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 21/316 (6%)

Query: 10  KPKRPFFSSGPCAKRPGWSLGILEG--ALLGRSHRCVLGKERINKAIQLTRKVLEVPENY 67
           KP+   F SGP   R      +     +L G SHR    K  + +  +   ++  +P+ Y
Sbjct: 1   KPRDGRFGSGPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGY 60

Query: 68  RIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREF-TAPYGS 126
            + +     T   + A + L+  + +  L++  F   +   ++           TA  GS
Sbjct: 61  EVILGNGGATAFWDAATFGLIEKKSLH-LSFGEFSSKFAKAVKLAPWLGEPIIVTADPGS 119

Query: 127 LPD---FSKVDFDRDVVFVW--NGTTSGVCVPDVGFIPESREGLVICDATSAVFARHIDF 181
            P+      VD     V  W  N T++GV VP V     S + LV+ DATS      +D 
Sbjct: 120 APEPQADPGVD-----VIAWAHNETSTGVAVP-VRRPEGSDDALVVIDATSGAGGLPVDI 173

Query: 182 NKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPS--WPLPKIFRMVKGGRVMEGL 239
            + DV  F+ QK    + G  + I+SPA++ER+E    S  W +P+   +      ++  
Sbjct: 174 AETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRW-VPEFLSLPTA---VDNS 229

Query: 240 FCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVD 299
              +T NTP++  +    + + W+   GGL   V R   +++ L+ + QE  +      D
Sbjct: 230 LKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTD 289

Query: 300 ETTRSNTSICMKIVDS 315
              RS     +  VD 
Sbjct: 290 PGKRSQVVGTIDFVDD 305


>gnl|CDD|180036 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine
           aminotransferase; Provisional.
          Length = 360

 Score = 74.8 bits (185), Expect = 3e-14
 Identities = 75/320 (23%), Positives = 122/320 (38%), Gaps = 96/320 (30%)

Query: 40  SHRCVLGKE---RINKAIQLTRKVLEVPENYRI-----------AIVP---ASDTGAVEM 82
           SHR    KE      +A    R++L +P+NY++           A+VP          + 
Sbjct: 40  SHR---SKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADY 96

Query: 83  AL---WS--------LLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDFS 131
                WS          G   V+V A               S +D       +  +P   
Sbjct: 97  VDTGSWSKKAIKEAKKYG--EVNVAA---------------SSED-----DGFTYIPPLD 134

Query: 132 KVDFDRDVVFV---WNGTTSGV---CVPDVGFIPESREGLVICDATSAVFARHIDFNKLD 185
           +     D  +V    N T  G     +PD G +P      ++ D +S + +R ID +K  
Sbjct: 135 EWQLSDDAAYVHYTSNETIDGTEFHELPDTGDVP------LVADMSSDILSRPIDVSKFG 188

Query: 186 VVTFSAQKVLGGEAGFGIIILSPASVER---LEKYVPSWPLPKIFR---MVKGGRVMEGL 239
           ++   AQK + G AG  I+I+      R   L + +PS  +P +               +
Sbjct: 189 LIYAGAQKNI-GPAGLTIVIV------REDLLGRALPS--IPSMLDYKTHADND----SM 235

Query: 240 FCGETINTPSLLCIEDYIDALL---WLKKMGGLSACVERCNANAAVLFQFIQENDWIENL 296
           +     NTP    I  Y+ A L   WLK+ GG++A  +R    AA+L+  I  +D+  N 
Sbjct: 236 Y-----NTPPTFAI--YL-AGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRN- 286

Query: 297 AVDETTRSNTSICMKIVDSD 316
            V    RS  ++   + D +
Sbjct: 287 PVAPEDRSRMNVPFTLADEE 306


>gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase.
          Length = 365

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 74/349 (21%), Positives = 126/349 (36%), Gaps = 94/349 (26%)

Query: 16  FSSGP--------------CAKRPGWSLGILEGALLGRSHRCVLGKER---INKAIQLTR 58
           FS+GP                   G  + ++E      SHR   GKE    I KA    R
Sbjct: 11  FSAGPATLPANVLAKAQAELYNWEGSGMSVME-----MSHR---GKEFLSIIQKAEADLR 62

Query: 59  KVLEVPENYRI-----------AIVPASDTGAVEMALWSLLGYRGVDVLAW--ESFG--- 102
           ++L++P+NY +           A +P +     + A + + G       +W  ++     
Sbjct: 63  ELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTG-------SWSKKAAKEAK 115

Query: 103 ------LGWMSDIRQLSLQDVREFTAPYGSLPDFSKVDFDRDVVFVW---NGTTSGV--- 150
                 +                    Y  +P  S+ +   D  FV    N T  GV   
Sbjct: 116 KYCKTNVIASGK------------DEKYTKIPSVSEWELTPDAKFVHICANETIHGVEFK 163

Query: 151 CVPDVGFIPESREGLVICDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPAS 210
             PDVG         ++ D +S   ++ +D +K  V+   AQK + G +G  I+I+    
Sbjct: 164 DYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNV-GPSGVTIVIIRKDL 216

Query: 211 VERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALL--WLKKMGG 268
           +       P     KI    +   +          NTP    I  Y+  L+   L   GG
Sbjct: 217 IGNARPITPGMLDYKI--HAENDSLY---------NTPPCFGI--YMCGLVFEDLLAQGG 263

Query: 269 LSACVERCNANAAVLFQFIQENDWIENLAVDETTRSNTSICMKIVDSDI 317
           L A  +R    A +L+  I E++      V+++ RS  ++   +  S++
Sbjct: 264 LKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSEL 312


>gnl|CDD|132344 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
           This family includes a number of 2-aminoethylphosphonate
           aminotransferases, some of which are indicated to
           operate in the catabolism of 2-aminoethylphosphonate
           (AEP) and others which are involved in the biosynthesis
           of the same compound. The catabolic enzyme (PhnW, ) is
           known to use pyruvate:alanine as the transfer partner
           and is modeled by the equivalog-level alignment
           (TIGR02326). The PhnW family is apparently a branch of a
           larger tree including genes (AepZ) adjacent to others
           responsible for the biosynthesis of
           phosphonoacetaldehyde. The identity of the transfer
           partner is unknown for these enzymes and considering the
           reversed flux compared to PhnW, it may very well be
           different.
          Length = 355

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 19/154 (12%)

Query: 74  ASDTGAVEMALWSLLGYRG-VDVLAWESFG--LGWMSDIRQLSLQDVREFTAPYGSLPDF 130
            S T AVE  + SL+   G + VL   ++G  L  + +   +   D+    + Y   PD 
Sbjct: 57  GSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLN--FSEY-EPPDL 113

Query: 131 SKV--------DFDRDVVFVWNGTTSGVCVP--DVGFIPESREGLVICDATSAVFARHID 180
           +++        D    V  V + TT+G+  P   +  +  S   ++I DA S+  A  ID
Sbjct: 114 NRIEEALAADPDI-THVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPID 172

Query: 181 FNKLDV--VTFSAQKVLGGEAGFGIIILSPASVE 212
             +LDV  +  SA K L G  GFG +I     +E
Sbjct: 173 IEELDVDALIASANKCLEGVPGFGFVIARRDLLE 206


>gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional.
          Length = 364

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 65/273 (23%), Positives = 110/273 (40%), Gaps = 39/273 (14%)

Query: 35  ALLGRSHRCVLGKERINKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVD 94
           ++LG SHR       + +A    R +L +P+ Y +  +    +    M   +    R   
Sbjct: 36  SVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS--RPGA 93

Query: 95  VLAWESFGLGWMSDIRQLSLQDVREFTAP----------YGSLPDFSKVDFDRDVVF--- 141
               E    G+ S   + ++ +     A           Y +LP  +++D+D    F   
Sbjct: 94  AAP-EYVTTGYWS---RKAIGEASRVAAMRVVWDGAASGYRTLPSLAELDWDARAPFRHY 149

Query: 142 VWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHIDFNKLDVVTFSAQKVLGGEAGF 201
           V N T  G+  PD   +P+S     I D +S   +R  D     +V   AQK L G AG 
Sbjct: 150 VSNETVEGLQFPDAAGLPDSPL---IADMSSDFMSRPFDVEAYGMVYAHAQKNL-GPAGV 205

Query: 202 GIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALL 261
            + I+  A +ER+   +P       FR     R           NTP +  I  Y+ AL+
Sbjct: 206 TVAIIRRALLERVPDTLPPM---LDFRTHVEHR--------SNYNTPPVFAI--YVMALV 252

Query: 262 --WLK-KMGGLSACVERCNANAAVLFQFIQEND 291
             W++ ++GG+ A  +     AA+L+  +   +
Sbjct: 253 LRWIRDEIGGVHAMRDINARKAAMLYATLDALN 285


>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase.
          Length = 401

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 71  IVPASDTGAVEMALWSLL--GYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLP 128
           I P + TGA E AL + L  G + V     + F L W+  +++L+  DV    +P+G   
Sbjct: 64  IFPTTGTGAWESALTNTLSPGDKVVSFRIGQ-FSLLWIDQMQRLNF-DVDVVESPWGQGA 121

Query: 129 DF----SKVDFDRD-----VVFVWNGTTSGVC--VPDVGFIPESRE--GLVICDATSAVF 175
           D     SK+  D +     V  V N T++GV   +  V  + +  +   L++ D  S++ 
Sbjct: 122 DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIG 181

Query: 176 ARHIDFN----KLDVVTFSAQKVLGGEAGFGIIILSPASVERLEK 216
           A  +DF      +DV    +QK L    G GI+  SP ++E  + 
Sbjct: 182 A--LDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKT 224


>gnl|CDD|161897 TIGR00474, selA, seryl-tRNA(sec) selenium transferase.  In
           bacteria, the incorporation of selenocysteine as the
           21st amino acid, encoded by TGA, requires several
           elements: SelC is the tRNA itself, SelD acts as a donor
           of reduced selenium, SelA modifies a serine residue on
           SelC into selenocysteine, and SelB is a
           selenocysteine-specific translation elongation factor.
           3-prime or 5-prime non-coding elements of mRNA have been
           found as probable structures for directing
           selenocysteine incorporation. This model describes SelA.
           This model excludes homologs that appear to differ in
           function from Frankia alni, Helicobacter pylori,
           Methanococcus jannaschii and other archaea, and so on.
          Length = 454

 Score = 34.9 bits (81), Expect = 0.037
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 185 DVVTFSAQKVLGG-EAGFGIIILSPASVERLEKYVPSWPLPKIFR 228
           D+VTFS  K+LGG +A  GII+     +ERL+K     PL +  R
Sbjct: 280 DLVTFSGDKLLGGPQA--GIIVGKKELIERLKKN----PLTRALR 318


>gnl|CDD|181322 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional.
          Length = 398

 Score = 33.2 bits (76), Expect = 0.12
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 38/136 (27%)

Query: 165 LVICDATSAVFARHIDFNKL----DVVTFSAQKVLGGEAGF--GIIILSPASVERLEKYV 218
           LV+ D T   FA  I+ N L    D+V  SA K L G A    G++  S   +E++  Y 
Sbjct: 181 LVVVDNT---FATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY- 236

Query: 219 PSWPLPKIFRMVKGGRVMEGLFCGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNA 278
                                     IN  ++    D + A L L+ M  L   V +   
Sbjct: 237 ------------------------REINGATM----DPMSAYLILRGMKTLKLRVRQQQE 268

Query: 279 NAAVLFQFIQENDWIE 294
           +A  L +++Q +  +E
Sbjct: 269 SAMALAKYLQTHPKVE 284


>gnl|CDD|179819 PRK04311, PRK04311, selenocysteine synthase; Provisional.
          Length = 464

 Score = 32.5 bits (75), Expect = 0.19
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 185 DVVTFSAQKVLGG-EAGFGIIILSPASVERLEK 216
           D+VTFS  K+LGG +A  GII+     + RL+K
Sbjct: 285 DLVTFSGDKLLGGPQA--GIIVGKKELIARLKK 315


>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional.
          Length = 403

 Score = 32.5 bits (74), Expect = 0.21
 Identities = 50/197 (25%), Positives = 73/197 (37%), Gaps = 34/197 (17%)

Query: 42  RCVLGKE------RI-NKAIQLTRKVLEVPENYRIAIVPASDTGAVEMALWSLLGYRGVD 94
            C  G+E      RI N  + L  + +   E    A+  AS  GA+   LW+LL   G +
Sbjct: 48  ECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLR-PGDE 106

Query: 95  VL----------AWESFGLG-WMSDIRQLSLQDVREFTAPYGSLPDFSKVDFDRDVVF-- 141
           V+          A+   GLG +   +R + L D     A           D  R V F  
Sbjct: 107 VIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAIS--------DKTRMVYFET 158

Query: 142 VWNGTTSGVCVPDVGFIPESREGLVICDATSA--VFARHIDFNKLDVVTFSAQKVLGGEA 199
             N     V +  V  I       V+ D T       R ++    D+V  SA K LGG  
Sbjct: 159 PANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGA-DLVVHSATKYLGGHG 217

Query: 200 GF--GIIILSPASVERL 214
               G+++   A  +R+
Sbjct: 218 DITAGLVVGGKALADRI 234


>gnl|CDD|149600 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit.  The S.
           cerevisiae Mgr1 protein has been shown to be required
           for mitochondrial viability in yeast lacking
           mitochondrial DNA. It is a mitochondrial inner membrane
           protein, which interacts with Yme1 and is a new subunit
           of the i-AAA protease complex.
          Length = 362

 Score = 31.0 bits (70), Expect = 0.49
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 71  IVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREFTAPYGSLPDF 130
           +VPASD       L++L+G +          GL +    R L  +  +   A + SL  F
Sbjct: 47  LVPASDNLP---GLYTLVGLQTG-------IGLFFFKRFRTLGKKLRKRDIADFPSLNRF 96

Query: 131 SKVDFD 136
           S    D
Sbjct: 97  STTHGD 102


>gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE).
           This model represents a clade of acetylornithine
           deacetylases from proteobacteria. This enzyme is the
           final step of the "acetylated" ornithine biosynthesis
           pathway. The enzyme is closely related to dapE,
           succinyl-diaminopimelate desuccinylase, and outside of
           this clade annotation is very inaccurate as to which
           function should be ascribed to genes.
          Length = 364

 Score = 30.6 bits (69), Expect = 0.80
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 169 DATSAVFARHIDFNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEK---YVPSWPLPK 225
           DA    F   +  N  +VV++  +     E G   ++  P  + +  +   YV       
Sbjct: 296 DAELVAFLEELSGNAPEVVSYGTEAPQFQELGAEAVVCGPGDIRQAHQPDEYVE------ 349

Query: 226 IFRMVKGGRVMEGL 239
           I  +V+   V+  L
Sbjct: 350 IEDLVRCRAVLARL 363


>gnl|CDD|183113 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
          Length = 471

 Score = 29.8 bits (67), Expect = 1.3
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 181 FNKLDVVTFSAQKVLGGEAGFGIIIL---SPA---SVERLEKYVPSWPLPKIFRMVK--- 231
           F+ + VVT  A  VLGG A FG I +   SPA        E + P   LP +  MV    
Sbjct: 158 FSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNF 217

Query: 232 --GGRVMEGLFCGETIN 246
              G  + G+  GET N
Sbjct: 218 AFSGTELIGIAAGETEN 234


>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
           PilW.  Members of this family are designated PilF in ref
           (PubMed:8973346) and PilW in ref (PubMed:15612916). This
           outer membrane protein is required both for pilus
           stability and for pilus function such as adherence to
           human cells. Members of this family contain copies of
           the TPR (tetratricopeptide repeat) domain.
          Length = 234

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 293 IENLAVDETTRSNTSI--C-MKIVDSDIA------SLDINSQKSFCKSMLSFLEKEEIAY 343
           IE+    +  RS  +   C +K  D D A      +L I+ Q+       S LE  E+ Y
Sbjct: 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-----ESLLELAELYY 180

Query: 344 DIGSYRDAPLGLRVWVGVTVE-KEDLLL 370
             G Y+DA   L  +     +  E L L
Sbjct: 181 LRGQYKDARAYLERYQQTYNQTAESLWL 208


>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase.  This model
           describes a distinct clade of the Cys/Met metabolism
           pyridoxal phosphate-dependent enzyme superfamily.
           Members include examples of OAH/OAS sulfhydrylase, an
           enzyme with activity both as O-acetylhomoserine (OAH)
           sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
           sulphydrylase (EC 2.5.1.47). An alternate name for OAH
           sulfhydrylase is homocysteine synthase. This model is
           designated subfamily because it may or may not have both
           activities.
          Length = 418

 Score = 28.9 bits (65), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 166 VICDAT--SAVFARHIDFNKLDVVTFSAQKVLGGEA---GFGIII 205
           +I D T  +    R ID    D+V  SA K +GG     G G+I+
Sbjct: 175 LIVDNTFATPYLCRPIDHG-ADIVVHSATKYIGGHGTAIG-GVIV 217


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 28.7 bits (64), Expect = 2.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 311 KIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYR 349
           KI + +I   DI+ +    K    +LE EEI   I  Y 
Sbjct: 484 KIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYN 522


>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1.
          Length = 250

 Score = 28.5 bits (63), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 153 PDVGFIPESREGLVICDATSAVFARHIDFNKLDVVTFSAQKVLG 196
           P  G +P++ +G   CD    VFA+ +  +  D+V  S    LG
Sbjct: 126 PPEGRLPDATKG---CDHLRDVFAKQMGLSDKDIVALSGAHTLG 166


>gnl|CDD|179654 PRK03818, PRK03818, putative transporter; Validated.
          Length = 552

 Score = 28.3 bits (64), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 235 VMEGLFCGETINTPSL 250
           VM G+F G   NTP+L
Sbjct: 121 VMLGIFSGAVTNTPAL 136


>gnl|CDD|151884 pfam11445, DUF2894, Protein of unknown function (DUF2894).  This is
           a bacterial family of uncharacterized proteins.
          Length = 193

 Score = 28.1 bits (63), Expect = 4.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 256 YIDALLWLKKMGG 268
           Y+DAL WL+++ G
Sbjct: 179 YVDALSWLEQLAG 191


>gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA).  Catalyzes the
           first step in the modification of an adenosine near the
           anticodon to 2-methylthio-N6-isopentyladenosine.
          Length = 287

 Score = 28.1 bits (63), Expect = 4.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 229 MVKGGRVME--GLFC-GETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNAN 279
           M++ G + E   L+   +  + PS+  I  Y + LL+L+    L   +ER   N
Sbjct: 209 MLESGLLAEVKALYAQYDLCDLPSIQAI-GYKEFLLYLEGTVSLEDAIERIKCN 261


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 27.8 bits (62), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 312 IVDSDIASLDINSQKSFCKSMLSFLEKEEIAY 343
           I D  +ASLD++ +      ML   EK+ I+Y
Sbjct: 172 IADEALASLDMSMRSQLINLMLELQEKQGISY 203


>gnl|CDD|148155 pfam06378, DUF1071, Protein of unknown function (DUF1071).  This
           family consists of several hypothetical bacterial and
           phage proteins of unknown function.
          Length = 162

 Score = 27.4 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 338 KEEIAYDIGS---YRDAPLGLRVWVGVTVEK 365
           KE    D+ +   Y D   G  V V VTVE 
Sbjct: 46  KEFDHPDVRTENYYLDTETGYFVEVSVTVEG 76


>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
          Length = 273

 Score = 27.2 bits (61), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 203 IIILSPASVERLEKYVP 219
           + I SP SVE+LE  VP
Sbjct: 93  VSITSPISVEQLETLVP 109


>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily.  This model
           represents a subfamily of NifS-related cysteine
           desulfurases involved in FeS cluster formation needed
           for nitrogen fixation among other vital functions. Many
           cysteine desulfurases are also active as selenocysteine
           lyase and/or cysteine sulfinate desulfinase. This
           subfamily is associated with the six-gene SUF system
           described in E. coli and Erwinia as an FeS cluster
           formation system during oxidative stress. The active
           site Cys is this subfamily resembles GHHC with one or
           both His conserved.
          Length = 403

 Score = 27.2 bits (61), Expect = 7.7
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 147 TSGVCVP--DVGFIPESREGLVICDATSAVFARHIDFNKLDV--VTFSAQKVLG 196
             G   P  ++  +       V+ D   AV    +D   LD     FS  K+ G
Sbjct: 171 VLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYG 224


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,630,244
Number of extensions: 433694
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 33
Length of query: 391
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 296
Effective length of database: 3,941,713
Effective search space: 1166747048
Effective search space used: 1166747048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)