BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (391 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 391

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/391 (100%), Positives = 391/391 (100%)

Query: 1   MLDMRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV 60
           MLDMRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV
Sbjct: 1   MLDMRKPTRKPKRPFFSSGPCAKRPGWSLGILEGALLGRSHRCVLGKERINKAIQLTRKV 60

Query: 61  LEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREF 120
           LEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREF
Sbjct: 61  LEVPENYRIAIVPASDTGAVEMALWSLLGYRGVDVLAWESFGLGWMSDIRQLSLQDVREF 120

Query: 121 TAPYGSLPDFSKVDFDRDVVFVWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHID 180
           TAPYGSLPDFSKVDFDRDVVFVWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHID
Sbjct: 121 TAPYGSLPDFSKVDFDRDVVFVWNGTTSGVCVPDVGFIPESREGLVICDATSAVFARHID 180

Query: 181 FNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLF 240
           FNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLF
Sbjct: 181 FNKLDVVTFSAQKVLGGEAGFGIIILSPASVERLEKYVPSWPLPKIFRMVKGGRVMEGLF 240

Query: 241 CGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDE 300
           CGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDE
Sbjct: 241 CGETINTPSLLCIEDYIDALLWLKKMGGLSACVERCNANAAVLFQFIQENDWIENLAVDE 300

Query: 301 TTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVG 360
           TTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVG
Sbjct: 301 TTRSNTSICMKIVDSDIASLDINSQKSFCKSMLSFLEKEEIAYDIGSYRDAPLGLRVWVG 360

Query: 361 VTVEKEDLLLLCDWLRWVFYFQKISFLRAIS 391
           VTVEKEDLLLLCDWLRWVFYFQKISFLRAIS
Sbjct: 361 VTVEKEDLLLLCDWLRWVFYFQKISFLRAIS 391


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 75  SDTGAVEMALWSLLGYRGVDVLAWESFGLG 104
           SD     + L SL+G R + VL  +S GLG
Sbjct: 448 SDYSRPAIRLASLMGIRVIHVLTHDSIGLG 477


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,964
Number of Sequences: 1233
Number of extensions: 10517
Number of successful extensions: 29
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 3
length of query: 391
length of database: 328,796
effective HSP length: 76
effective length of query: 315
effective length of database: 235,088
effective search space: 74052720
effective search space used: 74052720
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)