Query gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 15:28:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780154.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1j7n_A Lethal factor precurso 23.9 34 0.001 16.7 1.3 32 26-57 68-104 (113)
2 >1im4_A DBH; DNA polymerase PA 19.9 40 0.0012 16.3 1.0 27 38-64 19-45 (107)
3 >1xfx_A Calmodulin-sensitive a 17.4 28 0.00083 17.2 -0.3 31 27-57 68-103 (113)
4 >3gqc_A DNA repair protein REV 13.9 71 0.0021 15.0 1.0 27 38-64 101-127 (198)
5 >3i1a_A Spectinomycin phosphot 13.6 88 0.0026 14.5 1.5 14 22-35 49-62 (125)
6 >1jx4_A DNA polymerase IV (fam 12.9 74 0.0022 14.9 0.9 26 38-63 14-39 (115)
7 >3bq0_A POL IV, DBH, DNA polym 12.8 77 0.0023 14.8 1.0 27 38-64 14-40 (111)
8 >2aq4_A DNA repair protein REV 11.8 1.3E+02 0.0037 13.6 1.9 27 39-65 67-99 (168)
9 >1r5q_A KAI A, circadian oscil 11.1 1.2E+02 0.0036 13.7 1.6 16 39-54 12-27 (102)
10 >1v2z_A Circadian clock protei 10.5 1.3E+02 0.0039 13.5 1.6 17 38-54 18-34 (111)
No 1
>>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis} (A:138-250)
Probab=23.94 E-value=34 Score=16.71 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHCHHHC
Q ss_conf 8885210554432112-----2789999863230323
Q gi|254780154|r 26 KIEKNINDTRRENAKL-----STKYREIVESYTPAME 57 (68)
Q Consensus 26 kieknindtrrenakl-----stkyreivesytpame 57 (68)
-|+.|+++-..--||- -..+||+.++|.|+|=
T Consensus 68 ~iken~~efQ~iFAkaFAyy~~P~~re~l~~YAp~mF 104 (113)
T 1j7n_A 68 FLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAF 104 (113)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHSHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHH
T ss_conf 8865068999999998787618207899997387889
No 2
>>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} (A:1-15,A:83-174)
Probab=19.93 E-value=40 Score=16.33 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHCHHHCCEEEEEE
Q ss_conf 211227899998632303237157678
Q gi|254780154|r 38 NAKLSTKYREIVESYTPAMEGISIIDV 64 (68)
Q Consensus 38 naklstkyreivesytpamegisiidv 64 (68)
-...|.+..+++++|+|.+|-.||=..
T Consensus 19 Y~~~S~~i~~i~~~~~p~ve~~SiDE~ 45 (107)
T 1im4_A 19 YEAFSNRIMNLLNKHADKIEVASIDEA 45 (107)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 999999999999708982997154446
No 3
>>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A (A:140-252)
Probab=17.37 E-value=28 Score=17.17 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHCHHHC
Q ss_conf 88521055443211227-----89999863230323
Q gi|254780154|r 27 IEKNINDTRRENAKLST-----KYREIVESYTPAME 57 (68)
Q Consensus 27 ieknindtrrenaklst-----kyreivesytpame 57 (68)
|+.|+++-..--||--. .+||+.++|.|+|-
T Consensus 68 ik~n~~efQ~vFAkaFAyy~eP~~re~l~~YAp~mF 103 (113)
T 1xfx_A 68 IKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMF 103 (113)
T ss_dssp TTTTTTHHHHHHHHHHHHHHSSSCSHHHHHSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHH
T ss_conf 875068999999998787618107899987387999
No 4
>>3gqc_A DNA repair protein REV1; protein-DNA complex, alternative splicing, DNA damage, DNA repair, DNA synthesis; HET: DNA DOC DCP; 2.50A {Homo sapiens} (A:1-96,A:213-314)
Probab=13.90 E-value=71 Score=14.99 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHCHHHCCEEEEEE
Q ss_conf 211227899998632303237157678
Q gi|254780154|r 38 NAKLSTKYREIVESYTPAMEGISIIDV 64 (68)
Q Consensus 38 naklstkyreivesytpamegisiidv 64 (68)
-...|.+..+|+.+|+|..|-.||=..
T Consensus 101 Y~~~S~~i~~il~~y~p~iE~~SiDE~ 127 (198)
T 3gqc_A 101 YKEVAQTLYETLASYTHNIEAVSCDEA 127 (198)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 999999999999986886512576306
No 5
>>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* (A:146-201,A:271-339)
Probab=13.59 E-value=88 Score=14.47 Aligned_cols=14 Identities=43% Similarity=0.494 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 10578885210554
Q gi|254780154|r 22 SESKKIEKNINDTR 35 (68)
Q Consensus 22 seskkieknindtr 35 (68)
.-||||..||+.+-
T Consensus 49 ~lskkiqp~ID~~i 62 (125)
T 3i1a_A 49 KLSKKIQPNVDKTI 62 (125)
T ss_dssp HHHHHCCCCCCHHH
T ss_pred HHHHHCCCCCCHHH
T ss_conf 99986110899999
No 6
>>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:1-10,A:78-182)
Probab=12.94 E-value=74 Score=14.88 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHCHHHCCEEEEE
Q ss_conf 21122789999863230323715767
Q gi|254780154|r 38 NAKLSTKYREIVESYTPAMEGISIID 63 (68)
Q Consensus 38 naklstkyreivesytpamegisiid 63 (68)
-.+.|.+.+++..+|+|..|-.||=.
T Consensus 14 Y~~~S~~i~~il~~~~p~ve~~SiDE 39 (115)
T 1jx4_A 14 YQQVSSRIXNLLREYSEKIEIASIDE 39 (115)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEEETTE
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 99999999988754698189628976
No 7
>>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} (A:1-10,A:78-169,A:236-244)
Probab=12.82 E-value=77 Score=14.79 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHCHHHCCEEEEEE
Q ss_conf 211227899998632303237157678
Q gi|254780154|r 38 NAKLSTKYREIVESYTPAMEGISIIDV 64 (68)
Q Consensus 38 naklstkyreivesytpamegisiidv 64 (68)
-.+.|.+..++.+.|+|..|-.||=..
T Consensus 14 Y~~~S~~i~~il~~~~~~ve~~SiDE~ 40 (111)
T 3bq0_A 14 YEAFSNRIMNLLNKHADKIEVASIDEA 40 (111)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCE
T ss_conf 999999765421035874102457625
No 8
>>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* (A:1-61,A:133-239)
Probab=11.82 E-value=1.3e+02 Score=13.64 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHCHH--HCCEEE----EEEE
Q ss_conf 11227899998632303--237157----6788
Q gi|254780154|r 39 AKLSTKYREIVESYTPA--MEGISI----IDVT 65 (68)
Q Consensus 39 aklstkyreivesytpa--megisi----idvt 65 (68)
...|.+..+++++|+|. +|-+|| +|+|
T Consensus 67 ~~~S~~i~~il~~~~~~~~Ie~vSiDEa~iDlt 99 (168)
T 2aq4_A 67 QLKSEAFYSTLKRLNIFNLILPISIDEAVCVRI 99 (168)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEE
T ss_conf 999999999998735898389973336789853
No 9
>>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} (A:)
Probab=11.09 E-value=1.2e+02 Score=13.71 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHCH
Q ss_conf 1122789999863230
Q gi|254780154|r 39 AKLSTKYREIVESYTP 54 (68)
Q Consensus 39 aklstkyreivesytp 54 (68)
..|...||+|+-||-.
T Consensus 12 ~~L~~~YR~ill~YF~ 27 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFT 27 (102)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999928
No 10
>>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.80A {Thermosynechococcus elongatus bp-1} (A:)
Probab=10.53 E-value=1.3e+02 Score=13.54 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHCH
Q ss_conf 21122789999863230
Q gi|254780154|r 38 NAKLSTKYREIVESYTP 54 (68)
Q Consensus 38 naklstkyreivesytp 54 (68)
-..|...||+|+-||-.
T Consensus 18 l~~L~~~YR~ill~YF~ 34 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFN 34 (111)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999918
Done!