Query gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 03:22:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780154.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z5i_A TM, general control pro 40.6 17 0.00073 17.4 2.9 39 22-60 12-50 (52)
2 1r5q_A KAI A, circadian oscill 12.8 70 0.003 14.2 1.6 16 39-54 12-27 (102)
3 2p7n_A Pathogenicity island 1 10.2 84 0.0035 13.8 1.2 38 19-59 176-214 (407)
4 1v2z_A Circadian clock protein 9.7 1E+02 0.0044 13.3 1.6 17 38-54 18-34 (111)
5 1j7n_A Lethal factor precursor 9.7 93 0.0039 13.5 1.3 31 26-56 205-240 (776)
6 2wh0_Q Pkcev3, protein kinase 7.6 94 0.004 13.5 0.6 16 18-33 9-24 (31)
7 1a93_B MAX protein, coiled coi 6.6 1.5E+02 0.0062 12.4 1.7 21 27-47 12-32 (34)
8 2dlg_A Filamin-B; beta-sandwic 5.4 1.8E+02 0.0074 12.0 1.1 18 49-66 58-75 (102)
9 2ee6_A Filamin-B; beta-sandwic 5.1 1.8E+02 0.0077 11.9 1.0 17 50-66 68-84 (105)
10 1gff_1 Bacteriophage G4 capsid 4.9 1.9E+02 0.0079 11.9 1.1 25 27-53 199-223 (426)
No 1
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.63 E-value=17 Score=17.45 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEE
Q ss_conf 105788852105544321122789999863230323715
Q gi|254780154|r 22 SESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60 (68)
Q Consensus 22 seskkieknindtrrenaklstkyreivesytpamegis 60 (68)
..-.|.||+|.|-..|--.-.-||+.|-|....|...+.
T Consensus 12 rsVakLeK~iDDLEDelYaqK~KykaiSEELD~aLNd~t 50 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999972458889999999887676799998998760
No 2
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=12.84 E-value=70 Score=14.19 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHCH
Q ss_conf 1122789999863230
Q gi|254780154|r 39 AKLSTKYREIVESYTP 54 (68)
Q Consensus 39 aklstkyreivesytp 54 (68)
..|...||+|+-+|-.
T Consensus 12 ~~L~~~YR~ill~YF~ 27 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFT 27 (102)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999918
No 3
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=10.23 E-value=84 Score=13.77 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCE
Q ss_conf 565105-78885210554432112278999986323032371
Q gi|254780154|r 19 GCDSES-KKIEKNINDTRRENAKLSTKYREIVESYTPAMEGI 59 (68)
Q Consensus 19 gcdses-kkieknindtrrenaklstkyreivesytpamegi 59 (68)
-|++|- -+|++.|.+..-.-- -.|.+++++||--|.-+
T Consensus 176 ~s~aelwa~Is~~I~nI~~~Y~---d~Y~eivk~yte~~Q~f 214 (407)
T 2p7n_A 176 MADSDLWDMISDQIGKIKDNYL---GVYENVVGQYTDFYKAF 214 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 7518999999999999988799---99999999999999999
No 4
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.80A {Thermosynechococcus elongatus bp-1} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=9.68 E-value=1e+02 Score=13.27 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHCH
Q ss_conf 21122789999863230
Q gi|254780154|r 38 NAKLSTKYREIVESYTP 54 (68)
Q Consensus 38 naklstkyreivesytp 54 (68)
-..|...||+|+-+|-.
T Consensus 18 l~~L~~~YR~ill~YF~ 34 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFN 34 (111)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999918
No 5
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis} SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A* 1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 1yqy_A*
Probab=9.67 E-value=93 Score=13.54 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHCHHH
Q ss_conf 88852105544321122-----78999986323032
Q gi|254780154|r 26 KIEKNINDTRRENAKLS-----TKYREIVESYTPAM 56 (68)
Q Consensus 26 kieknindtrrenakls-----tkyreivesytpam 56 (68)
-++.|+++-..--||-- ..|||+.++|.|+|
T Consensus 205 ~ik~n~~efQ~iFakaFayy~eP~~re~l~~YAp~m 240 (776)
T 1j7n_A 205 FLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEA 240 (776)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHSHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHH
T ss_conf 886506899999999878761820789999738788
No 6
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=7.55 E-value=94 Score=13.50 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=13.1
Q ss_pred HCCCCCHHHHHHHHHH
Q ss_conf 0565105788852105
Q gi|254780154|r 18 AGCDSESKKIEKNIND 33 (68)
Q Consensus 18 agcdseskkieknind 33 (68)
.-||.+-|..|.||..
T Consensus 9 spcdq~~kelennirk 24 (31)
T 2wh0_Q 9 SPCDQEIKELENNIRK 24 (31)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9337899999999999
No 7
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=6.62 E-value=1.5e+02 Score=12.45 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 885210554432112278999
Q gi|254780154|r 27 IEKNINDTRRENAKLSTKYRE 47 (68)
Q Consensus 27 ieknindtrrenaklstkyre 47 (68)
-...|.|-+|.|+-|....|.
T Consensus 12 hQQDiDDLkrQN~lle~qira 32 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 443369999988999999885
No 8
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=5.35 E-value=1.8e+02 Score=12.03 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.7
Q ss_pred HHHHCHHHCCEEEEEEEE
Q ss_conf 863230323715767888
Q gi|254780154|r 49 VESYTPAMEGISIIDVTL 66 (68)
Q Consensus 49 vesytpamegisiidvtl 66 (68)
.-+|+|.++|.-.|+|+.
T Consensus 58 ~v~y~P~~~G~h~v~V~~ 75 (102)
T 2dlg_A 58 CVRFVPQEMGVHTVSVKY 75 (102)
T ss_dssp EEEBCCCTTCEEEEEEES
T ss_pred EEEEEECCCCEEEEEEEE
T ss_conf 999998146279999999
No 9
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.11 E-value=1.8e+02 Score=11.94 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=14.6
Q ss_pred HHHCHHHCCEEEEEEEE
Q ss_conf 63230323715767888
Q gi|254780154|r 50 ESYTPAMEGISIIDVTL 66 (68)
Q Consensus 50 esytpamegisiidvtl 66 (68)
-+|+|...|.-.|+|++
T Consensus 68 v~y~P~~~G~y~i~V~~ 84 (105)
T 2ee6_A 68 VSYIAQEPGNYEVSIKF 84 (105)
T ss_dssp EEEEESSCEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
T ss_conf 99997986228999999
No 10
>1gff_1 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4} SCOP: b.121.5.1
Probab=4.93 E-value=1.9e+02 Score=11.87 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 885210554432112278999986323
Q gi|254780154|r 27 IEKNINDTRRENAKLSTKYREIVESYT 53 (68)
Q Consensus 27 ieknindtrrenaklstkyreivesyt 53 (68)
-.+-|++-||+-. + ++|+||..|.-
T Consensus 199 ~a~ti~~lrr~~f-~-qRY~Ei~~sh~ 223 (426)
T 1gff_1 199 YAKLHTEQERDYF-M-TRYRDIMKEFG 223 (426)
T ss_dssp HHHHHHHHHHHHT-C-CSHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHCC
T ss_conf 7899999999999-9-99999999608
Done!