Query gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Sun May 22 16:51:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780154.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j7na1 d.92.1.14 (A:27-263) A 17.5 23 0.0017 15.5 1.3 32 26-57 179-215 (237)
2 d1v2za_ a.186.1.1 (A:) Circadi 12.8 41 0.003 14.2 1.6 17 38-54 18-34 (106)
3 d1r8ja1 a.186.1.1 (A:177-282) 11.3 48 0.0035 13.8 1.6 17 38-54 15-31 (106)
4 d1r5qa_ a.186.1.1 (A:) Circadi 10.1 56 0.0041 13.4 1.6 15 39-53 9-23 (98)
5 d3ecfa1 d.17.4.21 (A:2-129) Un 9.7 50 0.0037 13.7 1.2 16 42-57 2-17 (128)
6 d2di8a1 b.1.18.10 (A:8-105) Fi 6.4 88 0.0064 12.4 1.5 18 49-66 60-77 (98)
7 d2w0pa1 b.1.18.10 (A:2237-2328 5.1 1.1E+02 0.0078 11.9 1.1 17 50-66 59-75 (92)
8 d2d7pa1 b.1.18.10 (A:8-106) Fi 4.5 1.2E+02 0.0086 11.7 1.2 17 50-66 62-78 (99)
9 d1qfha1 b.1.18.10 (A:646-749) 4.0 1.3E+02 0.0093 11.5 1.2 17 50-66 72-88 (104)
10 d1rp3b_ a.137.11.1 (B:) Anti-s 3.8 1.4E+02 0.0099 11.4 1.8 27 25-51 39-65 (87)
No 1
>d1j7na1 d.92.1.14 (A:27-263) Anthrax toxin lethal factor, N- and C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Probab=17.52 E-value=23 Score=15.53 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHCHHHC
Q ss_conf 88852105544321122-----789999863230323
Q gi|254780154|r 26 KIEKNINDTRRENAKLS-----TKYREIVESYTPAME 57 (68)
Q Consensus 26 kieknindtrrenakls-----tkyreivesytpame 57 (68)
-|..|+++-..--||-- ..+||+.++|.|+|-
T Consensus 179 ~ik~n~~EfQ~iFAkaFAyy~eP~~re~l~~YAp~mF 215 (237)
T d1j7na1 179 FLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAF 215 (237)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHSHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHH
T ss_conf 9975068999999998888708107899998388999
No 2
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=12.81 E-value=41 Score=14.18 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHCH
Q ss_conf 21122789999863230
Q gi|254780154|r 38 NAKLSTKYREIVESYTP 54 (68)
Q Consensus 38 naklstkyreivesytp 54 (68)
-..|...||+|+-||-.
T Consensus 18 L~~Lk~~YR~IlLsYFs 34 (106)
T d1v2za_ 18 LDELRSIYRTIVLEYFN 34 (106)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999908
No 3
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=11.32 E-value=48 Score=13.77 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHCH
Q ss_conf 21122789999863230
Q gi|254780154|r 38 NAKLSTKYREIVESYTP 54 (68)
Q Consensus 38 naklstkyreivesytp 54 (68)
-..|...||+|+-||-.
T Consensus 15 L~~Lk~~YR~IlLsYF~ 31 (106)
T d1r8ja1 15 HQAMQTSYREIVLSYFS 31 (106)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999999909
No 4
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=10.14 E-value=56 Score=13.42 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 112278999986323
Q gi|254780154|r 39 AKLSTKYREIVESYT 53 (68)
Q Consensus 39 aklstkyreivesyt 53 (68)
..|...||+|+-||-
T Consensus 9 ~~L~~~YR~ill~YF 23 (98)
T d1r5qa_ 9 QQLKSDYRQILLSYF 23 (98)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999991
No 5
>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]}
Probab=9.75 E-value=50 Score=13.68 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHCHHHC
Q ss_conf 2789999863230323
Q gi|254780154|r 42 STKYREIVESYTPAME 57 (68)
Q Consensus 42 stkyreivesytpame 57 (68)
.+||.||.+.|--|.|
T Consensus 2 t~kyheIi~qYf~aFe 17 (128)
T d3ecfa1 2 TEKYHEILKKYFLSFE 17 (128)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 3068999999998720
No 6
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=88 Score=12.38 Aligned_cols=18 Identities=28% Similarity=0.574 Sum_probs=15.2
Q ss_pred HHHHCHHHCCEEEEEEEE
Q ss_conf 863230323715767888
Q gi|254780154|r 49 VESYTPAMEGISIIDVTL 66 (68)
Q Consensus 49 vesytpamegisiidvtl 66 (68)
.-+|+|...|.-.|+|++
T Consensus 60 ~v~y~P~~~G~y~i~V~~ 77 (98)
T d2di8a1 60 KVSYFPTVPGVYIVSTKF 77 (98)
T ss_dssp EEEECCCSCSEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEE
T ss_conf 999997988409999999
No 7
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.08 E-value=1.1e+02 Score=11.93 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.6
Q ss_pred HHHCHHHCCEEEEEEEE
Q ss_conf 63230323715767888
Q gi|254780154|r 50 ESYTPAMEGISIIDVTL 66 (68)
Q Consensus 50 esytpamegisiidvtl 66 (68)
-+|+|...|.-.|+|+.
T Consensus 59 v~ytP~~~G~y~i~V~~ 75 (92)
T d2w0pa1 59 VAYVVQEPGDYEVSVKF 75 (92)
T ss_dssp EEEECSSCEEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEE
T ss_conf 99997987319999999
No 8
>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.50 E-value=1.2e+02 Score=11.70 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.6
Q ss_pred HHHCHHHCCEEEEEEEE
Q ss_conf 63230323715767888
Q gi|254780154|r 50 ESYTPAMEGISIIDVTL 66 (68)
Q Consensus 50 esytpamegisiidvtl 66 (68)
-+|+|...|.-.|+|.+
T Consensus 62 v~y~P~~~G~~~i~V~~ 78 (99)
T d2d7pa1 62 IRFIPHENGVHSIDVKF 78 (99)
T ss_dssp EEECCSSCEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
T ss_conf 99997878728999999
No 9
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}
Probab=4.04 E-value=1.3e+02 Score=11.50 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHCHHHCCEEEEEEEE
Q ss_conf 63230323715767888
Q gi|254780154|r 50 ESYTPAMEGISIIDVTL 66 (68)
Q Consensus 50 esytpamegisiidvtl 66 (68)
-+|+|...|...|.|++
T Consensus 72 v~y~p~~~G~~~i~V~~ 88 (104)
T d1qfha1 72 VVYDAPVEGNYNVNVTL 88 (104)
T ss_dssp EEECCCSSEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEE
T ss_conf 99996889959999999
No 10
>d1rp3b_ a.137.11.1 (B:) Anti-sigma factor FlgM {Aquifex aeolicus [TaxId: 63363]}
Probab=3.78 E-value=1.4e+02 Score=11.37 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788852105544321122789999863
Q gi|254780154|r 25 KKIEKNINDTRRENAKLSTKYREIVES 51 (68)
Q Consensus 25 kkieknindtrrenaklstkyreives 51 (68)
-+|.++++...-||-.+|-|-.||-|-
T Consensus 39 S~iA~~~~~nd~E~kD~skKvkeiKek 65 (87)
T d1rp3b_ 39 SKIAQELSKNDVEEKDLEKKVKELKEK 65 (87)
T ss_dssp HHHHHHHTTTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999874523454599999999999
Done!