BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
(68 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039831|gb|ACT56627.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS
Sbjct: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
Query: 61 IIDVTLVI 68
IIDVTLVI
Sbjct: 61 IIDVTLVI 68
>gi|324323843|gb|ADY24887.1| hypothetical protein YBT020_28664 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324323986|gb|ADY25029.1| hypothetical protein YBT020_29386 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 258
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 KKTIVLITILSTLAGCDSESKKIEKNINDTRRE------NAKLSTKYREIVESYTPAMEG 58
K+ ++L + S LAGC ++ +EK+ ++ E N K +T E ++S P+++
Sbjct: 2 KRLLILYVLFSILAGCSTKQSPVEKHESNIGHEDVELTKNIKKTTSKNEPLQSPAPSVQE 61
Query: 59 ISIIDVTLV 67
I+DV L+
Sbjct: 62 KVILDVPLI 70
>gi|156972410|ref|YP_001443317.1| fimbrial assembly protein PilP [Vibrio harveyi ATCC BAA-1116]
gi|156524004|gb|ABU69090.1| hypothetical protein VIBHAR_00030 [Vibrio harveyi ATCC BAA-1116]
Length = 171
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 4 RKKTIVLITILSTLAGCDSESKKIEKNI----NDTRRENAKLSTKYREIVESYTP 54
R K++++++++S L+GC + + + I N RR+ AKL +V SY P
Sbjct: 2 RNKSLLMVSMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEP 56
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039831|gb|ACT56627.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS
Sbjct: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
Query: 61 IIDVTLVI 68
IIDVTLVI
Sbjct: 61 IIDVTLVI 68
>gi|324323843|gb|ADY24887.1| hypothetical protein YBT020_28664 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324323986|gb|ADY25029.1| hypothetical protein YBT020_29386 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 258
Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 5 KKTIVLITILSTLAGCDSESKKIEKNINDTRRE------NAKLSTKYREIVESYTPAMEG 58
K+ ++L + S LAGC ++ +EK+ ++ E N K +T E ++S P+++
Sbjct: 2 KRLLILYVLFSILAGCSTKQSPVEKHESNIGHEDVELTKNIKKTTSKNEPLQSPAPSVQE 61
Query: 59 ISIIDVTLV 67
I+DV L+
Sbjct: 62 KVILDVPLI 70
>gi|156972410|ref|YP_001443317.1| fimbrial assembly protein PilP [Vibrio harveyi ATCC BAA-1116]
gi|156524004|gb|ABU69090.1| hypothetical protein VIBHAR_00030 [Vibrio harveyi ATCC BAA-1116]
Length = 171
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 4 RKKTIVLITILSTLAGCDSESKKIEKNI----NDTRRENAKLSTKYREIVESYTPAM 56
R K++++++++S L+GC + + + I N RR+ AKL +V SY P +
Sbjct: 2 RNKSLLMVSMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEI 58
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.314 0.130 0.341
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 968,682,275
Number of Sequences: 13984884
Number of extensions: 24871047
Number of successful extensions: 84209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 84205
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 4,792,584,752
effective HSP length: 40
effective length of query: 28
effective length of database: 4,233,189,392
effective search space: 118529302976
effective search space used: 118529302976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)