BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039831|gb|ACT56627.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 68

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
          MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS
Sbjct: 1  MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60

Query: 61 IIDVTLVI 68
          IIDVTLVI
Sbjct: 61 IIDVTLVI 68


>gi|324323843|gb|ADY24887.1| hypothetical protein YBT020_28664 [Bacillus thuringiensis serovar
          finitimus YBT-020]
 gi|324323986|gb|ADY25029.1| hypothetical protein YBT020_29386 [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 258

 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 5  KKTIVLITILSTLAGCDSESKKIEKNINDTRRE------NAKLSTKYREIVESYTPAMEG 58
          K+ ++L  + S LAGC ++   +EK+ ++   E      N K +T   E ++S  P+++ 
Sbjct: 2  KRLLILYVLFSILAGCSTKQSPVEKHESNIGHEDVELTKNIKKTTSKNEPLQSPAPSVQE 61

Query: 59 ISIIDVTLV 67
            I+DV L+
Sbjct: 62 KVILDVPLI 70


>gi|156972410|ref|YP_001443317.1| fimbrial assembly protein PilP [Vibrio harveyi ATCC BAA-1116]
 gi|156524004|gb|ABU69090.1| hypothetical protein VIBHAR_00030 [Vibrio harveyi ATCC BAA-1116]
          Length = 171

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 4  RKKTIVLITILSTLAGCDSESKKIEKNI----NDTRRENAKLSTKYREIVESYTPAM 56
          R K++++++++S L+GC +  + +   I    N  RR+ AKL      +V SY P +
Sbjct: 2  RNKSLLMVSMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEI 58


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.314    0.130    0.341 

Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,691,240
Number of Sequences: 13984884
Number of extensions: 11146253
Number of successful extensions: 34274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34273
Number of HSP's gapped (non-prelim): 3
length of query: 68
length of database: 4,792,584,752
effective HSP length: 40
effective length of query: 28
effective length of database: 4,233,189,392
effective search space: 118529302976
effective search space used: 118529302976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)