RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
          hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
          Length = 307

 Score = 26.0 bits (56), Expect = 2.0
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 1  MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
          +  +K   VL+     LAGC +      +     + E  ++   + ++ E    A  GI 
Sbjct: 8  LKLKKAAAVLLFSCVALAGCANNQTNASQ--PAEKNEKTEMKDDFAKL-EEQFDAKLGIF 64

Query: 61 IIDVT 65
           +D  
Sbjct: 65 ALDTG 69


>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA
           synthesis, NUCL binding, magnesium; HET: DNA DOC TTD
           DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A*
           2r8j_A* 2r8k_A* 2wtf_A* 1jih_A*
          Length = 520

 Score = 26.0 bits (56), Expect = 2.4
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)

Query: 40  KLSTKYREIVESYTPAMEGISI----IDVT 65
           + S K   I +     +E  SI    +D+ 
Sbjct: 140 RESRKALAIFKWACDLVERASIDEVFLDLG 169


>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
           DNA polymerase, translesion DNA synthesis, lesion
           bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
           PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
          Length = 459

 Score = 24.5 bits (52), Expect = 5.5
 Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 4/31 (12%)

Query: 39  AKLSTKYREIVESYTPAMEGISI----IDVT 65
             +S + +EI+  Y P    +S+    +++T
Sbjct: 108 RAVSKEVKEILADYDPNFMAMSLDEAYLNIT 138


>1jih_A DNA polymerase ETA; translesion, yeast, translation; HET: DNA;
           2.25A {Saccharomyces cerevisiae} SCOP: d.240.1.1 e.8.1.7
           PDB: 2r8j_A* 2r8k_A*
          Length = 513

 Score = 23.7 bits (50), Expect = 9.0
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 39  AKLSTKYREIVESYTPAMEGISI----IDVT 65
            + S K  +I +S    +E  SI    +D+ 
Sbjct: 132 RRESRKALKIFKSACDLVERASIDEVFLDLG 162


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.130    0.341 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 509,829
Number of extensions: 16872
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 4
Length of query: 68
Length of database: 5,693,230
Length adjustment: 38
Effective length of query: 30
Effective length of database: 4,771,958
Effective search space: 143158740
Effective search space used: 143158740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.7 bits)