RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62] (68 letters) >1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis} Length = 307 Score = 26.0 bits (56), Expect = 2.0 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60 + +K VL+ LAGC + + + E ++ + ++ E A GI Sbjct: 8 LKLKKAAAVLLFSCVALAGCANNQTNASQ--PAEKNEKTEMKDDFAKL-EEQFDAKLGIF 64 Query: 61 IIDVT 65 +D Sbjct: 65 ALDTG 69 >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 2r8j_A* 2r8k_A* 2wtf_A* 1jih_A* Length = 520 Score = 26.0 bits (56), Expect = 2.4 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%) Query: 40 KLSTKYREIVESYTPAMEGISI----IDVT 65 + S K I + +E SI +D+ Sbjct: 140 RESRKALAIFKWACDLVERASIDEVFLDLG 169 >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 Score = 24.5 bits (52), Expect = 5.5 Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Query: 39 AKLSTKYREIVESYTPAMEGISI----IDVT 65 +S + +EI+ Y P +S+ +++T Sbjct: 108 RAVSKEVKEILADYDPNFMAMSLDEAYLNIT 138 >1jih_A DNA polymerase ETA; translesion, yeast, translation; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.240.1.1 e.8.1.7 PDB: 2r8j_A* 2r8k_A* Length = 513 Score = 23.7 bits (50), Expect = 9.0 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%) Query: 39 AKLSTKYREIVESYTPAMEGISI----IDVT 65 + S K +I +S +E SI +D+ Sbjct: 132 RRESRKALKIFKSACDLVERASIDEVFLDLG 162 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.130 0.341 Gapped Lambda K H 0.267 0.0471 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 509,829 Number of extensions: 16872 Number of successful extensions: 43 Number of sequences better than 10.0: 1 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 4 Length of query: 68 Length of database: 5,693,230 Length adjustment: 38 Effective length of query: 30 Effective length of database: 4,771,958 Effective search space: 143158740 Effective search space used: 143158740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.7 bits)