BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 68

 Score =  135 bits (341), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
          MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS
Sbjct: 1  MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60

Query: 61 IIDVTLVI 68
          IIDVTLVI
Sbjct: 61 IIDVTLVI 68


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 21.9 bits (45), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 37  ENAKLSTKYREIVESYTPAMEGISIIDVTLVI 68
           ++ K+S   +  +++Y PA+E IS  D+   I
Sbjct: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSI 152


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 33  DTRRENAKLSTKYREIVESYTPAMEGISIIDVTLVI 68
           D R+    L   Y      + P ++GI   D  L+I
Sbjct: 347 DCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLII 382


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 20.8 bits (42), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 37 ENAKLSTKYREIVESYTPAMEGISII 62
          EN  LS K  EIV   +P+  G S I
Sbjct: 27 ENVHLSLKKGEIVALVSPSGTGKSTI 52


>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
          Length = 551

 Score = 20.8 bits (42), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 6   KTIVLITILSTLAGCDSESKKIEKNINDTRR--ENAKLSTKYREIVESYTPAMEGISIID 63
           K +V+    +T+ G +  S++IE  IN+ ++  E+ K      ++ E       G+++++
Sbjct: 321 KKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLE 380

Query: 64  V 64
           V
Sbjct: 381 V 381


>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 529

 Score = 20.8 bits (42), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 42  STKYREIVESYTPAMEG 58
           S+KY+ I+ES  P+  G
Sbjct: 98  SSKYQIIIESLIPSGSG 114


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 20.4 bits (41), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 8   IVLITILSTLAGCDSESKKIEKN 30
           +  +T L  +AGC     K+E+ 
Sbjct: 798 VFAVTKLGNVAGCKVSEGKVERG 820


>gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 20.4 bits (41), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 27  IEKNINDTRRENAKLSTKYREIVESYTPAMEGISI 61
           ++++  D R   A  +  YR+I  S+T    GI++
Sbjct: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.130    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,221
Number of Sequences: 1233
Number of extensions: 1187
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space:  8140561
effective search space used:  8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)