Query gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 31 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Sun May 22 17:33:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780155.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01589 A_thal_3526 uncharac 68.2 1.7 4.3E-05 23.5 0.4 12 15-26 10-21 (57) 2 pfam09713 A_thal_3526 Plant pr 55.2 4.2 0.00011 21.7 0.5 12 15-26 7-18 (54) 3 KOG0265 consensus 20.5 24 0.00062 18.1 -0.3 12 9-20 231-242 (338) 4 KOG4700 consensus 13.3 72 0.0018 16.0 0.6 16 11-26 180-195 (207) 5 cd04718 BAH_plant_2 BAH, or Br 11.4 83 0.0021 15.7 0.4 15 8-22 99-113 (148) 6 KOG1783 consensus 11.1 78 0.002 15.8 0.2 14 13-26 32-45 (77) 7 pfam03294 Pox_Rap94 RNA polyme 10.6 1.9E+02 0.0048 14.1 2.5 24 1-24 492-515 (796) 8 COG0139 HisI Phosphoribosyl-AM 8.7 72 0.0018 16.0 -0.7 13 16-28 32-44 (111) 9 PRK02759 bifunctional phosphor 8.2 83 0.0021 15.7 -0.5 7 18-24 32-38 (201) 10 pfam11493 TSP9 Thylakoid solub 8.2 1.6E+02 0.0041 14.4 0.9 18 14-31 16-33 (80) No 1 >TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589; InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.. Probab=68.17 E-value=1.7 Score=23.47 Aligned_cols=12 Identities=50% Similarity=0.877 Sum_probs=10.8 Q ss_pred HHHHHHHCCHHH Q ss_conf 545544251023 Q gi|254780155|r 15 DCILGYMNKEEE 26 (31) Q Consensus 15 dcilgymnkeee 26 (31) .||-+||.|||- T Consensus 10 ~Cl~~YMS~eE~ 21 (57) T TIGR01589 10 TCLQLYMSKEET 21 (57) T ss_pred HHHHHCCCHHHH T ss_conf 887314888999 No 2 >pfam09713 A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526). This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown. Probab=55.18 E-value=4.2 Score=21.66 Aligned_cols=12 Identities=58% Similarity=0.822 Sum_probs=10.6 Q ss_pred HHHHHHHCCHHH Q ss_conf 545544251023 Q gi|254780155|r 15 DCILGYMNKEEE 26 (31) Q Consensus 15 dcilgymnkeee 26 (31) .|+..||+|+|- T Consensus 7 rCl~~yMsk~E~ 18 (54) T pfam09713 7 RCIQLYMSKEEC 18 (54) T ss_pred HHHHHHCCHHHH T ss_conf 999996899999 No 3 >KOG0265 consensus Probab=20.47 E-value=24 Score=18.15 Aligned_cols=12 Identities=50% Similarity=0.515 Sum_probs=8.6 Q ss_pred EECCCHHHHHHH Q ss_conf 854854545544 Q gi|254780155|r 9 YLSNSMDCILGY 20 (31) Q Consensus 9 ylsnsmdcilgy 20 (31) -|||||||.+-- T Consensus 231 llsnsMd~tvrv 242 (338) T KOG0265 231 LLSNSMDNTVRV 242 (338) T ss_pred CCCCCCCCEEEE T ss_conf 432000454788 No 4 >KOG4700 consensus Probab=13.35 E-value=72 Score=16.00 Aligned_cols=16 Identities=50% Similarity=0.601 Sum_probs=11.9 Q ss_pred CCCHHHHHHHHCCHHH Q ss_conf 4854545544251023 Q gi|254780155|r 11 SNSMDCILGYMNKEEE 26 (31) Q Consensus 11 snsmdcilgymnkeee 26 (31) |--||-|+|||.|... T Consensus 180 slvmdkIlgkmRkskd 195 (207) T KOG4700 180 SLVMDKILGKMRKSKD 195 (207) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999863248 No 5 >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Probab=11.39 E-value=83 Score=15.72 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=10.2 Q ss_pred EEECCCHHHHHHHHC Q ss_conf 785485454554425 Q gi|254780155|r 8 IYLSNSMDCILGYMN 22 (31) Q Consensus 8 iylsnsmdcilgymn 22 (31) .+-.|+||||+|--. T Consensus 99 ~~d~~~~~~I~~~C~ 113 (148) T cd04718 99 DFADIEMECILRHCS 113 (148) T ss_pred CCCCCCHHHHHCEEE T ss_conf 710034565430002 No 6 >KOG1783 consensus Probab=11.12 E-value=78 Score=15.83 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=9.9 Q ss_pred CHHHHHHHHCCHHH Q ss_conf 54545544251023 Q gi|254780155|r 13 SMDCILGYMNKEEE 26 (31) Q Consensus 13 smdcilgymnkeee 26 (31) ...||-||||-.-| T Consensus 32 ~l~~lDgymNiaLe 45 (77) T KOG1783 32 TLVCLDGYMNIALE 45 (77) T ss_pred EEHHHHHHHHHHHH T ss_conf 03355447788888 No 7 >pfam03294 Pox_Rap94 RNA polymerase-associated transcription specificity factor, Rap94. Probab=10.57 E-value=1.9e+02 Score=14.07 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=19.2 Q ss_pred CEEEEEEEEECCCHHHHHHHHCCH Q ss_conf 915889878548545455442510 Q gi|254780155|r 1 MFTILYVIYLSNSMDCILGYMNKE 24 (31) Q Consensus 1 mftilyviylsnsmdcilgymnke 24 (31) +|-+.-||-|-+|.|-|+|||... T Consensus 492 n~Iv~lvivLnSsadfiisymk~k 515 (796) T pfam03294 492 NYIVVLVIVLNSSADFIISYMKSK 515 (796) T ss_pred EEEEEEEEEECCCHHHHHHHHHCC T ss_conf 047788878627668999998648 No 8 >COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism] Probab=8.65 E-value=72 Score=15.99 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=8.4 Q ss_pred HHHHHHCCHHHHC Q ss_conf 4554425102310 Q gi|254780155|r 16 CILGYMNKEEEKL 28 (31) Q Consensus 16 cilgymnkeeekl 28 (31) -.++|||+|.-.. T Consensus 32 LMlaymN~eAl~k 44 (111) T COG0139 32 LMLAYMNEEALAK 44 (111) T ss_pred EEEEECCHHHHHH T ss_conf 9988549999998 No 9 >PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed Probab=8.25 E-value=83 Score=15.72 Aligned_cols=7 Identities=100% Similarity=1.583 Sum_probs=0.0 Q ss_pred HHHHCCH Q ss_conf 5442510 Q gi|254780155|r 18 LGYMNKE 24 (31) Q Consensus 18 lgymnke 24 (31) |||||+| T Consensus 32 l~ymn~e 38 (201) T PRK02759 32 LGYMNKE 38 (201) T ss_pred EEECCHH T ss_conf 9864999 No 10 >pfam11493 TSP9 Thylakoid soluble phosphoprotein TSP9. The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil. Probab=8.17 E-value=1.6e+02 Score=14.40 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=0.0 Q ss_pred HHHHHHHHCCHHHHCCCC Q ss_conf 454554425102310169 Q gi|254780155|r 14 MDCILGYMNKEEEKLILD 31 (31) Q Consensus 14 mdcilgymnkeeeklild 31 (31) .|.|||.+.||+.-+--| T Consensus 16 ~D~ilG~l~KedQfyETd 33 (80) T pfam11493 16 FDFILGFITKEDQFYETD 33 (80) T ss_pred HHHHHHHHHHHHHCEECC T ss_conf 999986322010100146 Done!